Factsheet for PGSC0003DMT400083493

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g050550.1.1	Tomato	nucleus	73.72	73.54
PGSC0003DMT400066353	Potato	nucleus	48.91	71.02
KRH71184	Soybean	nucleus	48.18	49.01
KRH50235	Soybean	nucleus	46.23	47.62
VIT_03s0063g01050.t01	Wine grape	nucleus	47.69	47.57
CDX82312	Canola	nucleus	46.23	44.08
CDX99268	Canola	nucleus	46.72	43.24
CDY22991	Canola	nucleus	45.26	43.16
Bra001733.1-P	Field mustard	nucleus	46.47	41.7
CDX92302	Canola	nucleus	44.04	40.86
Bra022387.1-P	Field mustard	nucleus	44.04	40.86
AT3G19090.2	Thale cress	nucleus	47.45	40.46
Os07t0102500-01	Rice	nucleus	40.15	37.67
TraesCS2A01G256900.1	Wheat	nucleus	40.88	37.25
TraesCS2B01G285700.1	Wheat	nucleus	40.39	37.22
TraesCS2D01G265900.1	Wheat	nucleus	40.39	37.14
Os03t0566500-01	Rice	nucleus, plastid	38.2	36.6
GSMUA_Achr4P23770_001	Banana	nucleus	40.63	35.53
Zm00001d032397_P001	Maize	nucleus	35.28	35.11
Zm00001d018613_P004	Maize	nucleus	41.61	33.86
KXG38156	Sorghum	nucleus	37.96	33.19
EER97821	Sorghum	nucleus	41.61	32.88
PGSC0003DMT400064931	Potato	nucleus	34.79	30.75
PGSC0003DMT400054517	Potato	nucleus	26.28	27.41
PGSC0003DMT400075259	Potato	nucleus	32.85	26.06

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:102603884	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388
InterPro:La_HTH	UniProt:M1D6Y8	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF05383	EnsemblPlantsGene:PGSC0003DMG400033349
PGSC:PGSC0003DMG400033349	EnsemblPlants:PGSC0003DMT400083493	PFscan:PS50102	PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF62
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM00715	SUPFAM:SSF46785	SUPFAM:SSF54928
UniParc:UPI000295D5A0	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_006356602.1	SEG:seg	:

Description

Lupus la ribonucleoprotein [Source:PGSC_GENE;Acc:PGSC0003DMG400033349]

Coordinates

chr10:-:43003170..43006633

Molecular Weight (calculated)

45809.3 Da

IEP (calculated)

9.663

GRAVY (calculated)

-0.649

Length

411 amino acids

Sequence
(BLAST)

001: MAQMQPEKVA SSVQESTQDQ FVDHNGVGSF KFNVQAPAFV PRKSHATTIP ISGGYLYPCN FQYVSTNNNS KIYGGDQDAT SLLQEPMFVS SLSQKDKLPE
101: DLRLKVIKQV EYQLSDMSLL ANESLLKQMN KDPEAFVPIS SVSATKKIKS LITNNQLTLS HALLSSTKLI VSDDGKRVKR KIPFTDKDKE ELMLRTVVAE
201: NLPDDHSHHN IEKIFNVAGS VKTIRVCHPQ DPNTRTRGDL GISSKLHALI EFEHPEAAEK AAEKLNDERN WRKGLRVRLL LRRSPKSVLK SRKSAFEGCL
301: DDEDWLSSEL ADDSHHVSNQ SEVVDHTNVE ETLDAATTKK TWGKGRVKST RQRNQMYSGR GLLSSSPQSS NTYEAPVKQA TKGPRMPDGT RGFTMGRGKP
401: LSINIQTGVH V

Best Arabidopsis Sequence Match ( AT3G19090.1 )
(BLAST)

001: MAQMQREEVE SVTTEKKRLD GGGGSSGAQA TAFKFNAQAP EFVPRSHTTA PAPQVSPVSG YFYPCFHYNG GCIGGCGGGV CGGGGTGVGT QSSDWIYVGG
101: GDPTAQHQHV HDPAAAFYIS NPAVQFPASQ NSSSSSKNLL SDDLRLKIVK QVEYQFTDMS LLANESISKH ISKDPEGYVP VSYIASTKKI KALTSNHHLV
201: SLALRSSSKL VVSEDGKKVK RTSQFTDRDR EELQGRTVVA ENLPDDHSYQ NLEKIFGVVG NVKAIRICHP PESNSSRPKG DFLMSNKIHA LIEYDNTVIA
301: DKAVEKLNDE RNWRKGLRVR LLLRCSPKSV LKNRRNFDGI LIDDELPSYE SGEDSPRLHL TESQLDNDGD DNNVGGLWGK GRGKGRGRSP RSYAVGGGGR
401: SFGIGLGVSL GIPSLGSHES SSPKTATKGP RMPDGTRGFT MGRGKPSISL SPNNL

Arabidopsis Description

RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLZ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.