Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92302 | Canola | nucleus | 83.33 | 83.52 |
| CDX82312 | Canola | nucleus | 74.55 | 76.8 |
| CDY22991 | Canola | nucleus | 70.27 | 72.39 |
| AT3G19090.2 | Thale cress | nucleus | 76.13 | 70.12 |
| KRH50235 | Soybean | nucleus | 50.23 | 55.89 |
| KRH71184 | Soybean | nucleus | 49.55 | 54.46 |
| PGSC0003DMT400066353 | Potato | nucleus | 34.46 | 54.06 |
| VIT_03s0063g01050.t01 | Wine grape | nucleus | 48.42 | 52.18 |
| Solyc01g108310.2.1 | Tomato | nucleus | 42.79 | 47.26 |
| PGSC0003DMT400083493 | Potato | nucleus | 43.24 | 46.72 |
| Solyc10g050550.1.1 | Tomato | nucleus | 41.67 | 44.9 |
| Os07t0102500-01 | Rice | nucleus | 40.54 | 41.1 |
| Os03t0566500-01 | Rice | nucleus, plastid | 39.19 | 40.56 |
| TraesCS2B01G285700.1 | Wheat | nucleus | 38.74 | 38.56 |
| Zm00001d032397_P001 | Maize | nucleus | 35.81 | 38.5 |
| TraesCS2D01G265900.1 | Wheat | nucleus | 38.74 | 38.48 |
| GSMUA_Achr4P23770_001 | Banana | nucleus | 40.54 | 38.3 |
| TraesCS2A01G256900.1 | Wheat | nucleus | 38.74 | 38.14 |
| KXG38156 | Sorghum | nucleus | 38.96 | 36.81 |
| Zm00001d018613_P004 | Maize | nucleus | 41.67 | 36.63 |
| EER97821 | Sorghum | nucleus | 40.77 | 34.81 |
| CDY35155 | Canola | nucleus | 27.03 | 30.69 |
| CDY17896 | Canola | nucleus | 31.08 | 30.46 |
| CDY03229 | Canola | nucleus | 26.58 | 30.33 |
| CDY33465 | Canola | nucleus | 26.58 | 30.18 |
| CDY68074 | Canola | nucleus | 26.35 | 30.0 |
| CDX79791 | Canola | nucleus | 32.43 | 28.8 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078EIT5 | EnsemblPlants:CDX99268 | ProteinID:CDX99268 |
| ProteinID:CDX99268.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:1990904 | EnsemblPlantsGene:GSBRNA2T00107518001 | InterPro:IPR000504 | InterPro:IPR006630 |
| InterPro:IPR012677 | InterPro:IPR036388 | InterPro:La_HTH | InterPro:La_like_plant_RRM | InterPro:Lupus_La | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFAM:PF05383 | PRINTS:PR00302 | PFscan:PS50102 | PFscan:PS50961 | PANTHER:PTHR22792 |
| PANTHER:PTHR22792:SF62 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SMART:SM00715 | SUPFAM:SSF46785 |
| SUPFAM:SSF54928 | UniParc:UPI0004EF0361 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : |
Description
BnaC05g33830D
Coordinates
chrLK031909:-:691440..694246
Molecular Weight (calculated)
48191.8 Da
IEP (calculated)
8.953
GRAVY (calculated)
-0.575
Length
444 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQMHREDVE SVTADKKVSD GGGGGGGGGS SGTQASSFKF NAEAPEFVPQ SRAAVPTPQV SPISGYFYPC FHYSDGGGTA VGSQASDWFF VGEGDPAQHP
101: HVHDPAAAFY VPSPAVQFPV NQNSSPSSSL LSDDLRLKIV KQVEYQFTDM SLLANESISK HMNKDPEGYV PISYIASTKK IKALTSNHHL VSLALRSSSK
201: LVVSEDNKKV KRKVPFTDRD REDLQGRTVV AENLPDDHSY QNLEKIFGVV GNVKAIRICH PPESNSSRPK GDFLMSNKIH ALIEYDHTVV ADKAVEKLND
301: ERNWRKGLRV RLLLRCSPKS VLKHRRNFDG ILIDDESPYE SGEDSPRLHL TEHQLDNEGD ENTLGGLWGK GRGKGRGRSP RSYVVGGGER SFGIGMGLSL
401: GPMSPSLGLH GSSSPKTATK GPRMPDGTRG FTMGRGKPVN LSLI
101: HVHDPAAAFY VPSPAVQFPV NQNSSPSSSL LSDDLRLKIV KQVEYQFTDM SLLANESISK HMNKDPEGYV PISYIASTKK IKALTSNHHL VSLALRSSSK
201: LVVSEDNKKV KRKVPFTDRD REDLQGRTVV AENLPDDHSY QNLEKIFGVV GNVKAIRICH PPESNSSRPK GDFLMSNKIH ALIEYDHTVV ADKAVEKLND
301: ERNWRKGLRV RLLLRCSPKS VLKHRRNFDG ILIDDESPYE SGEDSPRLHL TEHQLDNEGD ENTLGGLWGK GRGKGRGRSP RSYVVGGGER SFGIGMGLSL
401: GPMSPSLGLH GSSSPKTATK GPRMPDGTRG FTMGRGKPVN LSLI
001: MAQMQREEVE SVTTEKKRLD GGGGSSGAQA TAFKFNAQAP EFVPRSHTTA PAPQVSPVSG YFYPCFHYNG GCIGGCGGGV CGGGGTGVGT QSSDWIYVGG
101: GDPTAQHQHV HDPAAAFYIS NPAVQFPASQ NSSSSSKNLL SDDLRLKIVK QVEYQFTDMS LLANESISKH ISKDPEGYVP VSYIASTKKI KALTSNHHLV
201: SLALRSSSKL VVSEDGKKVK RTSQFTDRDR EELQGRTVVA ENLPDDHSYQ NLEKIFGVVG NVKAIRICHP PESNSSRPKG DFLMSNKIHA LIEYDNTVIA
301: DKAVEKLNDE RNWRKGLRVR LLLRCSPKSV LKNRRNFDGI LIDDELPSYE SGEDSPRLHL TESQLDNDGD DNNVGGLWGK GRGKGRGRSP RSYAVGGGGR
401: SFGIGLGVSL GIPSLGSHES SSPKTATKGP RMPDGTRGFT MGRGKPSISL SPNNL
101: GDPTAQHQHV HDPAAAFYIS NPAVQFPASQ NSSSSSKNLL SDDLRLKIVK QVEYQFTDMS LLANESISKH ISKDPEGYVP VSYIASTKKI KALTSNHHLV
201: SLALRSSSKL VVSEDGKKVK RTSQFTDRDR EELQGRTVVA ENLPDDHSYQ NLEKIFGVVG NVKAIRICHP PESNSSRPKG DFLMSNKIHA LIEYDNTVIA
301: DKAVEKLNDE RNWRKGLRVR LLLRCSPKSV LKNRRNFDGI LIDDELPSYE SGEDSPRLHL TESQLDNDGD DNNVGGLWGK GRGKGRGRSP RSYAVGGGGR
401: SFGIGLGVSL GIPSLGSHES SSPKTATKGP RMPDGTRGFT MGRGKPSISL SPNNL
Arabidopsis Description
RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLZ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.