Factsheet for GSMUA_Achr4P23770_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066353	Potato	nucleus	29.36	48.76
VIT_03s0063g01050.t01	Wine grape	nucleus	41.28	47.09
KRH50235	Soybean	nucleus	39.79	46.87
Os03t0566500-01	Rice	nucleus, plastid	42.13	46.15
KRH71184	Soybean	nucleus	39.57	46.04
TraesCS2B01G285700.1	Wheat	nucleus	43.62	45.96
Os07t0102500-01	Rice	nucleus	42.77	45.89
TraesCS2D01G265900.1	Wheat	nucleus	43.62	45.86
TraesCS2A01G256900.1	Wheat	nucleus	43.4	45.23
Solyc01g108310.2.1	Tomato	nucleus	36.17	42.29
KXG38156	Sorghum	nucleus	41.91	41.91
Zm00001d032397_P001	Maize	nucleus	36.17	41.16
CDX82312	Canola	nucleus	37.45	40.84
PGSC0003DMT400083493	Potato	nucleus	35.53	40.63
CDY22991	Canola	nucleus	37.23	40.6
CDX99268	Canola	nucleus	38.3	40.54
CDX92302	Canola	nucleus	37.66	39.95
Bra022387.1-P	Field mustard	nucleus	37.66	39.95
Solyc10g050550.1.1	Tomato	nucleus	34.89	39.81
Zm00001d018613_P004	Maize	nucleus	41.91	39.01
Bra001733.1-P	Field mustard	nucleus	37.87	38.86
EER97821	Sorghum	nucleus	42.55	38.46
AT3G19090.2	Thale cress	nucleus	38.3	37.34
GSMUA_Achr3P19230_001	Banana	nucleus	33.4	34.51
GSMUA_Achr6P18240_001	Banana	nucleus	31.7	32.46
GSMUA_Achr2P11420_001	Banana	mitochondrion	31.91	30.43
GSMUA_Achr1P13840_001	Banana	nucleus, plastid	23.62	24.29

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030529
GO:GO:1990904	EnsemblPlantsGene:GSMUA_Achr4G23770_001	EnsemblPlants:GSMUA_Achr4P23770_001	EnsemblPlants:GSMUA_Achr4T23770_001	InterPro:IPR000504	InterPro:IPR006630
InterPro:IPR012677	InterPro:IPR036388	InterPro:La_HTH	InterPro:La_like_plant_RRM	InterPro:Lupus_La	UniProt:M0SRI8
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF05383	PRINTS:PR00302	PFscan:PS50102	PFscan:PS50961
PANTHER:PTHR22792	PANTHER:PTHR22792:SF62	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM00715
SUPFAM:SSF46785	SUPFAM:SSF54928	UniParc:UPI000295A34C	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G23770_001]

Coordinates

chr4:-:23762773..23766813

Molecular Weight (calculated)

51868.9 Da

IEP (calculated)

9.152

GRAVY (calculated)

-0.470

Length

470 amino acids

Sequence
(BLAST)

001: MAQQESRGEE EEVKLSSKEE ETAEAIAGFK FNVHAPEFVP RSQLQAAPAL SAGCFCPYLQ FFGNGGGGAA LGPEWFYFTE QEPVHFMPDF HGKIAGHSKS
101: NSDMIQKIVK QVEYQFSDTN LVANDFLMKI MNKDPEGYVP MSVVASWKKI KCLGANNHML AKALRTSTKL VLSEDGKKIK RKQVFTERDK EELQSRTVVV
201: ENLPEDYSRQ NLEKMFSVVG SVKNIRICHP QEPNSARSTK SDLLISNKLH ALVEYETTEQ AEKAVEKLND ERNWRKGLRV RTMLRCSPKS VIRGNHFELY
301: SEDDQSPSSQ TLGSPRIEQL LDHNVSPRSP ASVIMSSPDS CPIGRGLLTQ APQIGGALGH GGEASSKQTP QGPRMPDGTR GFTMGRGKPL SPVLGRSPTP
401: AAALASKNGF VPGSHASLHS TIKDLRLVSI RITNSWTSTF LTLCLAPSKY PSHVLPSLFL QSINGFQINR

Best Arabidopsis Sequence Match ( AT3G19090.1 )
(BLAST)

001: MAQMQREEVE SVTTEKKRLD GGGGSSGAQA TAFKFNAQAP EFVPRSHTTA PAPQVSPVSG YFYPCFHYNG GCIGGCGGGV CGGGGTGVGT QSSDWIYVGG
101: GDPTAQHQHV HDPAAAFYIS NPAVQFPASQ NSSSSSKNLL SDDLRLKIVK QVEYQFTDMS LLANESISKH ISKDPEGYVP VSYIASTKKI KALTSNHHLV
201: SLALRSSSKL VVSEDGKKVK RTSQFTDRDR EELQGRTVVA ENLPDDHSYQ NLEKIFGVVG NVKAIRICHP PESNSSRPKG DFLMSNKIHA LIEYDNTVIA
301: DKAVEKLNDE RNWRKGLRVR LLLRCSPKSV LKNRRNFDGI LIDDELPSYE SGEDSPRLHL TESQLDNDGD DNNVGGLWGK GRGKGRGRSP RSYAVGGGGR
401: SFGIGLGVSL GIPSLGSHES SSPKTATKGP RMPDGTRGFT MGRGKPSISL SPNNL

Arabidopsis Description

RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLZ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.