Factsheet for Bra022387.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92302	Canola	nucleus	100.0	100.0
Bra001733.1-P	Field mustard	nucleus	69.07	66.81
AT3G19090.2	Thale cress	nucleus	68.4	62.86
KRH50235	Soybean	nucleus	48.53	53.88
KRH71184	Soybean	nucleus	47.86	52.48
VIT_03s0063g01050.t01	Wine grape	nucleus	47.4	50.97
PGSC0003DMT400066353	Potato	nucleus	32.51	50.88
Solyc01g108310.2.1	Tomato	nucleus	42.44	46.77
Solyc10g050550.1.1	Tomato	nucleus	41.53	44.66
PGSC0003DMT400083493	Potato	nucleus	40.86	44.04
Os07t0102500-01	Rice	nucleus	40.41	40.87
Os03t0566500-01	Rice	nucleus, plastid	39.28	40.56
TraesCS2B01G285700.1	Wheat	nucleus	39.5	39.24
TraesCS2D01G265900.1	Wheat	nucleus	39.5	39.15
TraesCS2A01G256900.1	Wheat	nucleus	39.28	38.58
Zm00001d032397_P001	Maize	nucleus	35.44	38.01
GSMUA_Achr4P23770_001	Banana	nucleus	39.95	37.66
KXG38156	Sorghum	nucleus	39.5	37.23
Zm00001d018613_P004	Maize	nucleus	40.63	35.64
EER97821	Sorghum	nucleus	39.95	34.04
Bra025027.1-P	Field mustard	nucleus	25.73	29.16
Bra017566.1-P	Field mustard	nucleus	24.83	28.42
Bra004795.1-P	Field mustard	nucleus	31.6	28.28

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra022387	EnsemblPlants:Bra022387.1	EnsemblPlants:Bra022387.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030529	GO:GO:1990904	InterPro:IPR000504	InterPro:IPR006630	InterPro:IPR012677
InterPro:IPR036388	InterPro:La_HTH	InterPro:La_like_plant_RRM	InterPro:Lupus_La	UniProt:M4E0U0	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF05383	PRINTS:PR00302	PFscan:PS50102	PFscan:PS50961	PANTHER:PTHR22792
PANTHER:PTHR22792:SF62	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM00715	SUPFAM:SSF46785
SUPFAM:SSF54928	UniParc:UPI0002547F77	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

AT3G19090 (E=6e-151) | RNA-binding protein, putative

Coordinates

chrA05:-:18015421..18017887

Molecular Weight (calculated)

48036.6 Da

IEP (calculated)

9.140

GRAVY (calculated)

-0.564

Length

443 amino acids

Sequence
(BLAST)

001: MAQMHREDVE SVTADKKVSD GGGGGGGGSS GAQASSFKFN AEAPEFVPQS RAAVATPQVS PISGYFYPCF HYSDGGGTAV GTQASDWFFV GGGDPAQHPH
101: VHDPAAAYYV PSPAVQFPVN QNSSPSSSLL SDDLRLKIVK QVEYQFTDMS LLANESISKH MNKDPEGYVP ISYIASTKKI KALTSNHHLV SLALRSSSKL
201: VVSEDNKKVK RKVPFTDRDR EDLQGRTVVA ENLPDDHSYQ NLEKIFGVVG NVKAIRICHP PESNSSRPKG DFLMSNKIHA LIEYDHTVVA DKAVEKLNDE
301: RNWRKGLRVR LLLRCSPKSV LKHRRNFDGI LIDDESPYES GEDSPRLHLT EHQLDNEGDE NTLGGLWGKG RGKGRGRSPR SYVVGGGERS FGIGMGLSLG
401: PMSPSLGLHG SSSPKTATKG PRMPDGTRGF TMGRGKPVNL SLI

Best Arabidopsis Sequence Match ( AT3G19090.1 )
(BLAST)

001: MAQMQREEVE SVTTEKKRLD GGGGSSGAQA TAFKFNAQAP EFVPRSHTTA PAPQVSPVSG YFYPCFHYNG GCIGGCGGGV CGGGGTGVGT QSSDWIYVGG
101: GDPTAQHQHV HDPAAAFYIS NPAVQFPASQ NSSSSSKNLL SDDLRLKIVK QVEYQFTDMS LLANESISKH ISKDPEGYVP VSYIASTKKI KALTSNHHLV
201: SLALRSSSKL VVSEDGKKVK RTSQFTDRDR EELQGRTVVA ENLPDDHSYQ NLEKIFGVVG NVKAIRICHP PESNSSRPKG DFLMSNKIHA LIEYDNTVIA
301: DKAVEKLNDE RNWRKGLRVR LLLRCSPKSV LKNRRNFDGI LIDDELPSYE SGEDSPRLHL TESQLDNDGD DNNVGGLWGK GRGKGRGRSP RSYAVGGGGR
401: SFGIGLGVSL GIPSLGSHES SSPKTATKGP RMPDGTRGFT MGRGKPSISL SPNNL

Arabidopsis Description

RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLZ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.