Factsheet for VIT_03s0063g01050.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50235	Soybean	nucleus	59.71	61.65
KRH71184	Soybean	nucleus	60.19	61.39
PGSC0003DMT400066353	Potato	nucleus	37.86	55.12
Solyc01g108310.2.1	Tomato	nucleus	50.24	51.49
Bra001733.1-P	Field mustard	nucleus	54.37	48.91
CDX82312	Canola	nucleus	50.73	48.49
CDX99268	Canola	nucleus	52.18	48.42
CDY22991	Canola	nucleus	50.24	48.03
PGSC0003DMT400083493	Potato	nucleus	47.57	47.69
CDX92302	Canola	nucleus	50.97	47.4
Bra022387.1-P	Field mustard	nucleus	50.97	47.4
AT3G19090.2	Thale cress	nucleus	54.13	46.27
VIT_09s0002g07980.t01	Wine grape	cytosol	7.52	45.59
VIT_05s0094g01400.t01	Wine grape	mitochondrion	35.44	44.92
Solyc10g050550.1.1	Tomato	nucleus	43.69	43.69
Os03t0566500-01	Rice	nucleus, plastid	44.9	43.12
TraesCS2B01G285700.1	Wheat	nucleus	45.15	41.7
TraesCS2A01G256900.1	Wheat	nucleus	45.63	41.69
TraesCS2D01G265900.1	Wheat	nucleus	45.15	41.61
GSMUA_Achr4P23770_001	Banana	nucleus	47.09	41.28
Os07t0102500-01	Rice	nucleus	42.96	40.41
Zm00001d032397_P001	Maize	nucleus	40.05	39.95
KXG38156	Sorghum	nucleus	44.66	39.15
Zm00001d018613_P004	Maize	nucleus	46.12	37.62
VIT_10s0003g03190.t01	Wine grape	nucleus	29.61	35.67
EER97821	Sorghum	nucleus	44.9	35.58

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100241743	wikigene:100241743	Gene3D:3.30.70.330	MapMan:35.1	InterPro:Ataxin-2_C
ProteinID:CBI32464	ProteinID:CBI32464.3	ncoils:Coil	UniProt:D7TPP1	EMBL:FN596006	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006396	GO:GO:0006950
GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016491	GO:GO:0020037	GO:GO:0030529	GO:GO:0042744	GO:GO:0046872
GO:GO:0055114	GO:GO:0098869	GO:GO:1990904	InterPro:IPR000504	InterPro:IPR006630	InterPro:IPR012677
InterPro:IPR036388	EntrezGene:LOC100241743	wikigene:LOC100241743	InterPro:La_HTH	InterPro:La_like_plant_RRM	InterPro:Lupus_La
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF05383	PFAM:PF07145	PRINTS:PR00302	PFscan:PS50102
PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF62	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SMART:SM00715	SUPFAM:SSF46785	SUPFAM:SSF54928	UniParc:UPI0001982F18	ArrayExpress:VIT_03s0063g01050	EnsemblPlantsGene:VIT_03s0063g01050
EnsemblPlants:VIT_03s0063g01050.t01	unigene:Vvi.22602	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_002281817	RefSeq:XP_002281817.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:4481470..4484778

Molecular Weight (calculated)

45635.7 Da

IEP (calculated)

9.439

GRAVY (calculated)

-0.691

Length

412 amino acids

Sequence
(BLAST)

001: MAQLKREEQE MVNQETAEME KKESSTTTSA AASFKFNAQA PEFVPRSHTQ VPISGYFYPC FHLLGGGAGS ADWLYVADQD PVHFISNSNG SLPNSSKNLL
101: THDIQQKIIK QVEYQFNDMS LLASDSLAKH INKDPEGYVP ISVIASSKKV KALVSNNQLL AQALRSSSQL VVSSDGKKVR RKHLFTERDK EELQAHTVVA
201: ENLPEDHSHQ NLQKIFSVVG SVKNIRICHP QESNNSRSKG DFFISNKLHA LVEYESVEIA EKAVEMLNDE RNWRKGLRVR MLLRRSPKSV LKNRRSEFDG
301: IMDEEEGPHP EFSEDSSHPN NTELVIESNA EENSSGSKKG WARGRGKPRG RTQITSGRGL LAPSPQSSGS NQFEASAKQI TKGPRMPDGT RGFTMGRGKP
401: ISTPALASPL LG

Best Arabidopsis Sequence Match ( AT3G19090.1 )
(BLAST)

001: MAQMQREEVE SVTTEKKRLD GGGGSSGAQA TAFKFNAQAP EFVPRSHTTA PAPQVSPVSG YFYPCFHYNG GCIGGCGGGV CGGGGTGVGT QSSDWIYVGG
101: GDPTAQHQHV HDPAAAFYIS NPAVQFPASQ NSSSSSKNLL SDDLRLKIVK QVEYQFTDMS LLANESISKH ISKDPEGYVP VSYIASTKKI KALTSNHHLV
201: SLALRSSSKL VVSEDGKKVK RTSQFTDRDR EELQGRTVVA ENLPDDHSYQ NLEKIFGVVG NVKAIRICHP PESNSSRPKG DFLMSNKIHA LIEYDNTVIA
301: DKAVEKLNDE RNWRKGLRVR LLLRCSPKSV LKNRRNFDGI LIDDELPSYE SGEDSPRLHL TESQLDNDGD DNNVGGLWGK GRGKGRGRSP RSYAVGGGGR
401: SFGIGLGVSL GIPSLGSHES SSPKTATKGP RMPDGTRGFT MGRGKPSISL SPNNL

Arabidopsis Description

RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLZ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.