Factsheet for VIT_05s0094g01400.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g07980.t01	Wine grape	cytosol	12.31	58.82
Os11t0248200-01	Rice	nucleus, plasma membrane	52.62	48.31
KRG97304	Soybean	nucleus	66.77	46.37
KRH69036	Soybean	nucleus	65.85	44.96
GSMUA_Achr3P19230_001	Banana	nucleus	56.0	40.0
TraesCS7B01G166700.1	Wheat	nucleus	46.77	38.68
Solyc08g015650.2.1	Tomato	nucleus	54.15	38.6
GSMUA_Achr6P18240_001	Banana	nucleus	54.46	38.56
PGSC0003DMT400064931	Potato	nucleus	55.08	38.49
TraesCS7D01G269000.1	Wheat	nucleus	46.46	38.42
Os12t0225100-01	Rice	nucleus	28.62	38.27
Solyc12g019000.1.1	Tomato	nucleus	55.38	38.05
TraesCS7A01G265700.1	Wheat	nucleus	45.54	37.66
TraesCS4D01G084200.1	Wheat	nucleus	54.77	36.93
EES08246	Sorghum	nucleus	54.46	36.8
HORVU4Hr1G014800.1	Barley	nucleus	54.46	36.65
TraesCS4A01G229400.1	Wheat	nucleus	54.46	36.65
TraesCS5B01G121000.2	Wheat	nucleus	52.0	36.42
Zm00001d007279_P001	Maize	nucleus	52.62	36.38
TraesCS5D01G126900.3	Wheat	nucleus	52.0	36.34
GSMUA_Achr2P11420_001	Banana	mitochondrion	55.08	36.31
TraesCS4B01G087000.1	Wheat	nucleus	53.85	36.31
HORVU7Hr1G056460.1	Barley	nucleus	43.38	36.15
HORVU5Hr1G029110.1	Barley	nucleus	51.08	35.93
Os08t0542900-01	Rice	nucleus	47.08	35.83
TraesCS5A01G115200.1	Wheat	nucleus	50.77	35.48
VIT_03s0063g01050.t01	Wine grape	nucleus	44.92	35.44
Zm00001d031707_P001	Maize	nucleus	46.15	34.88
EES15258	Sorghum	nucleus	46.46	34.55
PGSC0003DMT400075259	Potato	nucleus	53.85	33.78
Solyc12g096640.1.1	Tomato	nucleus, plastid	52.0	32.94
VIT_10s0003g03190.t01	Wine grape	nucleus	34.46	32.75
EES16897	Sorghum	nucleus	49.23	32.72
Zm00001d023987_P001	Maize	nucleus	38.77	25.71
Zm00001d020113_P001	Maize	cytosol	30.46	24.87

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100259405	wikigene:100259405	Gene3D:3.30.70.330	MapMan:35.1	ProteinID:CBI24756
ProteinID:CBI24756.3	UniProt:D7T2M5	EMBL:FN595507	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388	EntrezGene:LOC100259405
wikigene:LOC100259405	InterPro:La_HTH	InterPro:La_like_plant_RRM	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF05383	PFscan:PS50102
PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF52	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00715
SUPFAM:SSF46785	SUPFAM:SSF54928	TIGR:TC62833	UniParc:UPI0001BE27B9	ArrayExpress:VIT_05s0094g01400	EnsemblPlantsGene:VIT_05s0094g01400
EnsemblPlants:VIT_05s0094g01400.t01	unigene:Vvi.612	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_002275950	RefSeq:XP_002275950.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:-:24673706..24693993

Molecular Weight (calculated)

36037.6 Da

IEP (calculated)

10.103

GRAVY (calculated)

-0.819

Length

325 amino acids

Sequence
(BLAST)

001: MWRRLGTDSP RKLLRRFSIS DVNLATTEHL MRFINKDPEG YVPISVVASF KKIKALVSSH SQLATVLRNS TKLVVSEDGK KVRRLHPLTE SDMEELQSRI
101: VVAENLPEDH CHQNLMKIFS AVGSVKTIRT CQPQTSNGGA SSAARSSKTD NMLFSNKLHA FVEYESIELA EKAVVELNDE GNWRSGLRVR LMHRRVAKSA
201: QARSRKGHEG EAICEEDDAC TSEQLPNDKQ PEDPDVHSHE HAGEEHINDK EGAQRKGRSR GRGKGRGRGQ YHHHGNRGNH VGTPPNSSIN HEQPAVAKPP
301: PGPRMPDGTR GFSMGRGKPV AVNIA

Best Arabidopsis Sequence Match ( AT2G43970.1 )
(BLAST)

001: MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE

Arabidopsis Description

LARP6BLa-related protein 6B [Source:UniProtKB/Swiss-Prot;Acc:O80567]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.