Factsheet for TraesCS5A01G115200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G359000.1
TraesCS2B01G378400.1
TraesCS2D01G358000.1
TraesCS5A01G161800.2
TraesCS5B01G159400.1
TraesCS5D01G167000.1
TraesCS7A01G288700.1
TraesCS7B01G182800.3
TraesCS7D01G287900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43970.1	TraesCS2A01G359000.1	AT1G49760.1	21798944
AT2G43970.1	TraesCS2B01G378400.1	AT1G49760.1	21798944
AT2G43970.1	TraesCS2D01G358000.1	AT1G49760.1	21798944
AT2G43970.1	TraesCS5A01G161800.2	AT1G49760.1	21798944
AT2G43970.1	TraesCS5B01G159400.1	AT1G49760.1	21798944
AT2G43970.1	TraesCS5D01G167000.1	AT1G49760.1	21798944
AT2G43970.1	TraesCS7A01G288700.1	AT1G49760.1	21798944
AT2G43970.1	TraesCS7B01G182800.3	AT1G49760.1	21798944
AT2G43970.1	TraesCS7D01G287900.1	AT1G49760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G029110.1	Barley	nucleus	93.33	93.94
TraesCS5D01G126900.3	Wheat	nucleus	85.16	85.16
TraesCS5B01G121000.2	Wheat	nucleus	84.3	84.48
Os12t0225100-01	Rice	nucleus	31.61	60.49
EES16897	Sorghum	nucleus	61.51	58.49
TraesCS4A01G229400.1	Wheat	nucleus	56.13	54.04
GSMUA_Achr6P18240_001	Banana	nucleus	52.26	52.94
GSMUA_Achr3P19230_001	Banana	nucleus	50.97	52.09
VIT_09s0002g07980.t01	Wine grape	cytosol	7.53	51.47
VIT_05s0094g01400.t01	Wine grape	mitochondrion	35.48	50.77
Zm00001d023987_P001	Maize	nucleus	49.25	46.73
TraesCS7A01G265700.1	Wheat	nucleus	38.28	45.29
KRG97304	Soybean	nucleus	42.58	42.31
GSMUA_Achr2P11420_001	Banana	mitochondrion	43.44	40.97
KRH69036	Soybean	nucleus	41.94	40.97
CDY17896	Canola	nucleus	39.14	40.18
Bra004795.1-P	Field mustard	nucleus	41.51	38.99
CDX79791	Canola	nucleus	41.51	38.6
Solyc08g015650.2.1	Tomato	nucleus	37.85	38.6
Solyc12g019000.1.1	Tomato	nucleus	38.06	37.42
PGSC0003DMT400064931	Potato	nucleus	36.99	36.99
AT2G43970.1	Thale cress	nucleus	41.08	35.05
PGSC0003DMT400075259	Potato	nucleus	37.85	33.98
Solyc12g096640.1.1	Tomato	nucleus, plastid	36.99	33.53
TraesCS2A01G256900.1	Wheat	nucleus	31.18	32.15
TraesCS3A01G293900.1	Wheat	nucleus	28.6	27.14

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	InterPro:Ataxin-2_C	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:1990904
InterPro:IPR000504	InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388	InterPro:La_HTH	InterPro:La_like_plant_RRM
InterPro:Lupus_La	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF05383	PFAM:PF07145	PRINTS:PR00302
PFscan:PS50102	PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF81	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00715	SUPFAM:SSF46785	SUPFAM:SSF54928	EnsemblPlantsGene:TraesCS5A01G115200	EnsemblPlants:TraesCS5A01G115200.1	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	TIGR:cd08033	TIGR:cd12288	SEG:seg	:	:

Description

No Description!

Coordinates

chr5A:+:230809102..230818920

Molecular Weight (calculated)

50799.2 Da

IEP (calculated)

8.480

GRAVY (calculated)

-0.554

Length

465 amino acids

Sequence
(BLAST)

001: MPQQEVPDQI AVGWFAVEAP ERTGSLQRSG SNSRLNAQAP EFVPRVAAVV PPPQPPPAVI RVFAVPSPPP RAAFFAAPLP PSSFEFFAPV RVGGAFVAEE
101: PEPEMERATP PVAEPAVDGL TDEVVQKITK QVEYYFSDIN LATTEHLMRF ISKDPQGYVP ISVIAGFKKI KALVHNNPML AAALRTSSKL VVSGDGKRVK
201: RRHPFTESDM QEFQSRIVVA ENLPGDPSYQ NLMKIFSAVG SVRTIRTCYP QTPNGPGPAT NRSAKLDMLF ANKLHAFVEY ETHEDAEKAI LELNDERNWR
301: NGLRSRLLNT CMTKGPVKGK TGGHEGDGNG EEDVSTSNQS NERQLEGSFQ LSDVLPEHLF DENNSDKQGP KRGKGRGRCG KGRGRGYNQL NNNHHHIHNA
401: SNHHQVINSC GSHPVGIPPN TQLIMVEQLL PVANKQPPGP RMPDGTRGFA MGRGKPSSAS CTVEL

Best Arabidopsis Sequence Match ( AT2G43970.1 )
(BLAST)

001: MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE

Arabidopsis Description

LARP6BLa-related protein 6B [Source:UniProtKB/Swiss-Prot;Acc:O80567]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.