CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH50336
KRH70673

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43970.1	KRH50336	AT1G49760.1	21798944
AT2G43970.1	KRH70673	AT1G49760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69036	Soybean	nucleus	82.27	80.88
VIT_05s0094g01400.t01	Wine grape	mitochondrion	46.37	66.77
CDY17896	Canola	nucleus	47.22	48.79
Os11t0248200-01	Rice	nucleus, plasma membrane	36.32	48.02
Bra004795.1-P	Field mustard	nucleus	50.0	47.27
GSMUA_Achr3P19230_001	Banana	nucleus	45.94	47.25
CDX79791	Canola	nucleus	48.93	45.8
Solyc08g015650.2.1	Tomato	nucleus	43.59	44.74
GSMUA_Achr6P18240_001	Banana	nucleus	43.8	44.66
Solyc12g019000.1.1	Tomato	nucleus	44.23	43.76
AT2G43970.1	Thale cress	nucleus	50.85	43.67
PGSC0003DMT400064931	Potato	nucleus	43.38	43.66
EES08246	Sorghum	nucleus	44.23	43.04
TraesCS5D01G126900.3	Wheat	nucleus	42.73	43.01
TraesCS7A01G265700.1	Wheat	nucleus	36.11	43.0
TraesCS5B01G121000.2	Wheat	nucleus	42.52	42.89
TraesCS5A01G115200.1	Wheat	nucleus	42.31	42.58
HORVU5Hr1G029110.1	Barley	nucleus	41.88	42.42
TraesCS7B01G166700.1	Wheat	nucleus	35.47	42.24
TraesCS4D01G084200.1	Wheat	nucleus	43.38	42.12
TraesCS7D01G269000.1	Wheat	nucleus	35.26	41.98
HORVU4Hr1G014800.1	Barley	nucleus	43.16	41.82
TraesCS4A01G229400.1	Wheat	nucleus	42.73	41.41
HORVU7Hr1G056460.1	Barley	nucleus	34.4	41.28
Zm00001d007279_P001	Maize	nucleus	41.45	41.28
TraesCS4B01G087000.1	Wheat	nucleus	42.31	41.08
Zm00001d031707_P001	Maize	nucleus	36.54	39.77
Os08t0542900-01	Rice	nucleus	36.11	39.58
EES15258	Sorghum	nucleus	35.47	37.99
GSMUA_Achr2P11420_001	Banana	mitochondrion	39.96	37.93
PGSC0003DMT400075259	Potato	nucleus	41.88	37.84
EES16897	Sorghum	nucleus	39.1	37.42
KRH71184	Soybean	nucleus	32.27	37.38
KRH50235	Soybean	nucleus	31.84	37.34
Solyc12g096640.1.1	Tomato	nucleus, plastid	40.6	37.04
Os12t0225100-01	Rice	nucleus	19.23	37.04
Zm00001d023987_P001	Maize	nucleus	32.69	31.22
KRH11196	Soybean	nucleus	26.92	31.11
KRH21060	Soybean	nucleus	26.28	30.75
Zm00001d020113_P001	Maize	cytosol	20.51	24.12

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100813426	Gene3D:3.30.70.330	MapMan:35.1	EMBL:ACUP02012183	EnsemblPlantsGene:GLYMA_19G263600
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030529	GO:GO:1990904	UniProt:I1NCU3	InterPro:IPR000504	InterPro:IPR006630
InterPro:IPR012677	InterPro:IPR036388	EnsemblPlants:KRG97304	ProteinID:KRG97304	ProteinID:KRG97304.1	InterPro:La_HTH
InterPro:La_like_plant_RRM	InterPro:Lupus_La	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF05383	PRINTS:PR00302	PFscan:PS50102
PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF52	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00715
SUPFAM:SSF46785	SUPFAM:SSF54928	UniParc:UPI00023DDCDE	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr19:+:50630776..50638604

Molecular Weight (calculated)

51627.6 Da

IEP (calculated)

8.606

GRAVY (calculated)

-0.708

Length

468 amino acids

Sequence
(BLAST)

001: MAQESLSETP DISPPSSTAQ SQPDPSLSRN VSFSRLNAQA PEFVPTRASP RADFQQPRLV VPPPPPPPAS GILHVYSPPP TSQFHVPIQG HVVPVQNHHH
101: HLAHQHHVPA HYRSHHHPHQ YYVSSDSAVQ HSQVDPDHAL SSKSKMSDEA SQKILNQVEY YFSDLNLATT DHLMRFVNKD PEGFVPISVV ASFKKIKALI
201: ASHSQLATVL RNSSKLVVSE DGKKIKRQYP LTESDIEEIQ SRIVVAENLP EDHCHQNLMK VFSAVGSVKT IRTCPPQTSN SGASSASRLG KVDGMPLSNK
301: LHAFVEYESV ELAERAVAEL NEEGNWRSGL RVRLMLRRMS KPAQGRGKKG LDVEVGCEED SPYVPEPQAS EKQLEDASFP DTQLHEYVQG EEHGHDKESG
401: QRKGRSRGRG KGRGRVHCHQ NNRVGTPSSN NTIFTDQVVA KQPPGPRMPD GTRGFSMGRG KPVAVNIA

Best Arabidopsis Sequence Match ( AT2G43970.1 )
(BLAST)

001: MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE

Arabidopsis Description

LARP6BLa-related protein 6B [Source:UniProtKB/Swiss-Prot;Acc:O80567]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.