Factsheet for Zm00001d007279_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003106_P003
Zm00001d005276_P007
Zm00001d019824_P004
Zm00001d025801_P005

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43970.1	Zm00001d003106_P003	AT1G49760.1	21798944
AT2G43970.1	Zm00001d005276_P007	AT1G49760.1	21798944
AT2G43970.1	Zm00001d019824_P004	AT1G49760.1	21798944
AT2G43970.1	Zm00001d025801_P005	AT1G49760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES08246	Sorghum	nucleus	85.74	83.78
Os11t0248200-01	Rice	nucleus, plasma membrane	54.04	71.75
TraesCS4D01G084200.1	Wheat	nucleus	66.38	64.73
TraesCS4B01G087000.1	Wheat	nucleus	64.68	63.07
TraesCS4A01G229400.1	Wheat	nucleus	58.09	56.52
HORVU4Hr1G014800.1	Barley	nucleus	57.66	56.11
VIT_05s0094g01400.t01	Wine grape	mitochondrion	36.38	52.62
GSMUA_Achr3P19230_001	Banana	nucleus	49.79	51.43
VIT_09s0002g07980.t01	Wine grape	cytosol	7.23	50.0
GSMUA_Achr6P18240_001	Banana	nucleus	48.72	49.89
KRH69036	Soybean	nucleus	44.04	43.49
Zm00001d031707_P001	Maize	nucleus	38.72	42.33
CDY17896	Canola	nucleus	40.21	41.72
GSMUA_Achr2P11420_001	Banana	mitochondrion	43.62	41.58
KRG97304	Soybean	nucleus	41.28	41.45
Zm00001d023987_P001	Maize	nucleus	42.34	40.61
CDX79791	Canola	nucleus	42.55	40.0
Bra004795.1-P	Field mustard	nucleus	41.91	39.8
Zm00001d019729_P001	Maize	nucleus	7.45	38.89
Solyc08g015650.2.1	Tomato	nucleus	37.45	38.6
Solyc12g019000.1.1	Tomato	nucleus	38.3	38.05
PGSC0003DMT400064931	Potato	nucleus	37.23	37.63
AT2G43970.1	Thale cress	nucleus	42.13	36.33
PGSC0003DMT400075259	Potato	nucleus	37.23	33.78
Solyc12g096640.1.1	Tomato	nucleus, plastid	36.17	33.14
Zm00001d032397_P001	Maize	nucleus	27.45	31.23
Zm00001d018613_P004	Maize	nucleus	30.85	28.71
Zm00001d020113_P001	Maize	cytosol	23.19	27.39
Zm00001d043418_P136	Maize	nucleus	23.83	24.35

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100217316	Gene3D:3.30.70.330	MapMan:35.1	UniProt:A0A1D6F563	InterPro:Ataxin-2_C
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030529	GO:GO:1990904	InterPro:IPR000504	InterPro:IPR006630	InterPro:IPR012677
InterPro:IPR036388	InterPro:La_HTH	InterPro:La_like_plant_RRM	InterPro:Lupus_La	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:ONM26434.1
PFAM:PF05383	PFAM:PF07145	PRINTS:PR00302	PFscan:PS50102	PFscan:PS50961	PANTHER:PTHR22792
PANTHER:PTHR22792:SF81	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00715	SUPFAM:SSF46785	SUPFAM:SSF54928
UniParc:UPI000220B34C	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d007279	EnsemblPlants:Zm00001d007279_P001	EnsemblPlants:Zm00001d007279_T001
SEG:seg	:	:	:	:	:

Description

La-related protein 6B

Coordinates

chr2:+:226688336..226698541

Molecular Weight (calculated)

51274.9 Da

IEP (calculated)

7.445

GRAVY (calculated)

-0.808

Length

470 amino acids

Sequence
(BLAST)

001: MSQQEAVDPP SATDERLGGL PRSGSTSRLN AQAPEFVPRA AAVPPPPPQQ KVVRLFAPPP HAAFFVAAPR PPPPPFEYYA AVATGGGGRF GPPAAAAEQE
101: AEAEQPPRDG SFDDPVPKIR KQVEYYFSDI NLATTEHLMR FISKDPEGYV PISVVAGFKK IKALVQSNSM LASALRTSSK LVVSDDGARV KREQPFTESD
201: LEELQARIVV AENLPDDHCY QNLMRLFSVV GSVRTIRTCY PQTPNGTGPA TNRSAKLDML FANKLHAFVE YDTIEDAARA IVELNDERNW RSGLRVRLLS
301: TCMTKGGKGK KGGHESDGYG DEENVSTSDQ PYDKYLEETP QMSDVPGEHM TEDSAGDMGR GRVRGRGRGG RGRGRGYHQQ NNNQHHQHYQ NSSHHSNSSS
401: TRPVGTPPPS GHPVMIEQQQ QQQAAQPQPL TAANKQPPGP RMPDGSRGFS MGRGKPQTLT PKVSESEPEQ

Best Arabidopsis Sequence Match ( AT2G43970.1 )
(BLAST)

001: MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE

Arabidopsis Description

LARP6BLa-related protein 6B [Source:UniProtKB/Swiss-Prot;Acc:O80567]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.