Factsheet for PGSC0003DMT400075259

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400066245

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43970.1	PGSC0003DMT400066245	AT1G49760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g096640.1.1	Tomato	nucleus, plastid	58.88	59.45
VIT_09s0002g07980.t01	Wine grape	cytosol	7.14	54.41
VIT_05s0094g01400.t01	Wine grape	mitochondrion	33.78	53.85
PGSC0003DMT400064931	Potato	nucleus	42.28	47.1
Os11t0248200-01	Rice	nucleus, plasma membrane	30.31	44.35
KRG97304	Soybean	nucleus	37.84	41.88
KRH69036	Soybean	nucleus	38.03	41.39
PGSC0003DMT400066353	Potato	nucleus	22.59	41.34
CDY17896	Canola	nucleus	35.52	40.62
GSMUA_Achr3P19230_001	Banana	nucleus	35.14	40.0
TraesCS4A01G229400.1	Wheat	nucleus	36.87	39.54
HORVU4Hr1G014800.1	Barley	nucleus	36.68	39.34
TraesCS4D01G084200.1	Wheat	nucleus	35.91	38.59
TraesCS4B01G087000.1	Wheat	nucleus	35.91	38.59
TraesCS5D01G126900.3	Wheat	nucleus	34.56	38.49
TraesCS5B01G121000.2	Wheat	nucleus	34.36	38.36
GSMUA_Achr6P18240_001	Banana	nucleus	33.98	38.34
Bra004795.1-P	Field mustard	nucleus	36.29	37.98
TraesCS7B01G166700.1	Wheat	nucleus	28.76	37.91
HORVU5Hr1G029110.1	Barley	nucleus	33.78	37.88
TraesCS5A01G115200.1	Wheat	nucleus	33.98	37.85
EES08246	Sorghum	nucleus	34.75	37.42
TraesCS7D01G269000.1	Wheat	nucleus	28.38	37.4
Zm00001d007279_P001	Maize	nucleus	33.78	37.23
CDX79791	Canola	nucleus	35.14	36.4
TraesCS7A01G265700.1	Wheat	nucleus	27.41	36.13
EES16897	Sorghum	nucleus	33.4	35.38
AT2G43970.1	Thale cress	nucleus	37.07	35.23
HORVU7Hr1G056460.1	Barley	nucleus	26.45	35.13
Os08t0542900-01	Rice	nucleus	28.76	34.89
GSMUA_Achr2P11420_001	Banana	mitochondrion	33.01	34.69
EES15258	Sorghum	nucleus	28.57	33.87
Os12t0225100-01	Rice	nucleus	15.83	33.74
Zm00001d031707_P001	Maize	nucleus	27.61	33.26
PGSC0003DMT400083493	Potato	nucleus	26.06	32.85
PGSC0003DMT400054517	Potato	nucleus	22.2	29.19
Zm00001d023987_P001	Maize	nucleus	25.29	26.73
Zm00001d020113_P001	Maize	cytosol	16.8	21.86

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:102602672	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030529
GO:GO:1990904	InterPro:IPR000504	InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388	InterPro:La_HTH
InterPro:La_like_plant_RRM	InterPro:Lupus_La	UniProt:M1CUU5	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF05383	EnsemblPlantsGene:PGSC0003DMG400029270
PGSC:PGSC0003DMG400029270	EnsemblPlants:PGSC0003DMT400075259	PRINTS:PR00302	PFscan:PS50102	PFscan:PS50961	PANTHER:PTHR22792
PANTHER:PTHR22792:SF52	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00715	SUPFAM:SSF46785	SUPFAM:SSF54928
UniParc:UPI000294E638	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_006342440.1	SEG:seg	:

Description

Lupus la ribonucleoprotein [Source:PGSC_GENE;Acc:PGSC0003DMG400029270]

Coordinates

chr12:-:58236284..58240655

Molecular Weight (calculated)

56257.3 Da

IEP (calculated)

8.850

GRAVY (calculated)

-0.430

Length

518 amino acids

Sequence
(BLAST)

001: MAIEHDTLFL DSLNSTATSS SASLDLDHPF ESTPSSSSPL SPSYTKLNAR AIAFIPRSSS SPSLSSAMLA KSSSSPSLAT MSHPQSSRAD LNNRPGSRIG
101: PGSGPVNGQT VVHLIATPSA TFHQITTHVP VQNYIYASQL PVQYPYGGGI GRGFVDHGGL PAVVVIGADS ERLSDEACQK IINQVEFYFS DINLATTDHL
201: IRIMFKDPEG YVPMSVVASF KKIKALTSNH AYVAKILQCS TKLVVSEDGR KVRRQFPLSE KDLEELQSRI VVAENLPDDH CHQNLMKIFS AVGSVRMIRT
301: CQPQLNGGAS AASRTGKSDS TLYSNKLHAF VEYESIELAE KAVMELNDED NWRNGLKVRI LNRCTGKSGQ IRGKKVGYES EVSFKEDDTS SEASEKHSDD
401: LWHHLDTHLY DLAEEHGVDG QRKGLNRSWV KGLGQGRGRP QFHQTSRGGH LGTPQASMRR AYSVGSALSS INRFSLAGQP SMLSDQSAPV KQASVPRMPD
501: GTRGFSMGRG KPVAIKTT

Best Arabidopsis Sequence Match ( AT2G43970.1 )
(BLAST)

001: MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE

Arabidopsis Description

LARP6BLa-related protein 6B [Source:UniProtKB/Swiss-Prot;Acc:O80567]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.