Factsheet for GSMUA_Achr6P18240_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P09890_001
GSMUA_Achr4P20270_001
GSMUA_Achr7P05430_001
GSMUA_Achr8P24250_001
GSMUA_Achr9P00990_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43970.1	GSMUA_Achr4P09890_001	AT1G49760.1	21798944
AT2G43970.1	GSMUA_Achr4P20270_001	AT1G49760.1	21798944
AT2G43970.1	GSMUA_Achr7P05430_001	AT1G49760.1	21798944
AT2G43970.1	GSMUA_Achr8P24250_001	AT1G49760.1	21798944
AT2G43970.1	GSMUA_Achr9P00990_001	AT1G49760.1	21798944
AT2G43970.1	GSMUA_AchrUn_...	AT1G49760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P19230_001	Banana	nucleus	68.85	69.45
VIT_09s0002g07980.t01	Wine grape	cytosol	8.5	57.35
Os11t0248200-01	Rice	nucleus, plasma membrane	42.7	55.37
VIT_05s0094g01400.t01	Wine grape	mitochondrion	38.56	54.46
GSMUA_Achr2P11420_001	Banana	mitochondrion	57.52	53.55
TraesCS5D01G126900.3	Wheat	nucleus	53.38	52.69
TraesCS5A01G115200.1	Wheat	nucleus	52.94	52.26
TraesCS5B01G121000.2	Wheat	nucleus	52.51	51.94
HORVU5Hr1G029110.1	Barley	nucleus	51.63	51.3
Os12t0225100-01	Rice	nucleus	26.8	50.62
TraesCS4D01G084200.1	Wheat	nucleus	52.51	50.0
TraesCS4B01G087000.1	Wheat	nucleus	51.63	49.17
EES08246	Sorghum	nucleus	51.2	48.86
Zm00001d007279_P001	Maize	nucleus	49.89	48.72
EES16897	Sorghum	nucleus	50.76	47.65
TraesCS7A01G265700.1	Wheat	nucleus	39.65	46.31
HORVU4Hr1G014800.1	Barley	nucleus	48.58	46.17
TraesCS4A01G229400.1	Wheat	nucleus	48.58	46.17
TraesCS7D01G269000.1	Wheat	nucleus	39.43	46.06
TraesCS7B01G166700.1	Wheat	nucleus	39.43	46.06
HORVU7Hr1G056460.1	Barley	nucleus	38.56	45.38
EES15258	Sorghum	nucleus	42.7	44.85
Zm00001d031707_P001	Maize	nucleus	41.61	44.42
KRG97304	Soybean	nucleus	44.66	43.8
KRH69036	Soybean	nucleus	45.32	43.7
Os08t0542900-01	Rice	nucleus	40.3	43.33
CDY17896	Canola	nucleus	42.27	42.83
Bra004795.1-P	Field mustard	nucleus	43.36	40.2
CDX79791	Canola	nucleus	43.79	40.2
Solyc08g015650.2.1	Tomato	nucleus	39.22	39.47
Solyc12g019000.1.1	Tomato	nucleus	39.87	38.69
PGSC0003DMT400064931	Potato	nucleus	38.56	38.06
AT2G43970.1	Thale cress	nucleus	43.79	36.88
Zm00001d023987_P001	Maize	nucleus	39.22	36.73
PGSC0003DMT400075259	Potato	nucleus	38.34	33.98
Solyc12g096640.1.1	Tomato	nucleus, plastid	37.91	33.92
GSMUA_Achr4P23770_001	Banana	nucleus	32.46	31.7
Zm00001d020113_P001	Maize	cytosol	25.27	29.15
GSMUA_Achr1P13840_001	Banana	nucleus, plastid	25.49	25.6

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030529	GO:GO:1990904
EnsemblPlantsGene:GSMUA_Achr6G18240_001	EnsemblPlants:GSMUA_Achr6P18240_001	EnsemblPlants:GSMUA_Achr6T18240_001	InterPro:IPR000504	InterPro:IPR006630	InterPro:IPR012677
InterPro:IPR036388	InterPro:La_HTH	InterPro:La_like_plant_RRM	InterPro:Lupus_La	UniProt:M0T822	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF05383	PRINTS:PR00302	PFscan:PS50102	PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF81
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00715	SUPFAM:SSF46785	SUPFAM:SSF54928	UniParc:UPI000295EDA1
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

transposon protein, putative, Mutator sub-class, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G18240_001]

Coordinates

chr6:-:12351280..12360355

Molecular Weight (calculated)

50375.7 Da

IEP (calculated)

6.803

GRAVY (calculated)

-0.748

Length

459 amino acids

Sequence
(BLAST)

001: MAQEILDETL ELPDDRTSEP GVERSPSDIV DPSLSRSLSS SRLNARAAEF VPRVAQPPSP APAQIHHGHD PVAHQVMHVF HQTSPSPTYF GPGASSFEYY
101: GGGPAGGFGE HEGGHSGVDP DQSYPARDGL SEEVTQKITK QVEYYFSDVN LATTEHLMRF INKDPDGFVP ISVVAGFKKI RALVHNNSQL AMALRTSSKL
201: VVSDDGKKVG RQQPFTESDM EELQSRIVVA ENLPEDHCYQ NLMKIFSAVG SVKTIRTCYP QPPNGTAAAV NRPTKLEMLF GNRLHAFVVY ETLEDAEKAV
301: AELNDEKNWR TGLKLRLFPK FVTKHGQARG RRGHEADING EEDVCTSTHS NEKQVEDTYH PSEVLHEHES EESFNDRDGA PRRGRGRGRG GRGRGRGQPY
401: NNSRGGGHAV GTPPSSYVIH PDREQPAVAH KQPPGPRMPD GTRGFTMGRG KPVVPTSTV

Best Arabidopsis Sequence Match ( AT2G43970.1 )
(BLAST)

001: MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE

Arabidopsis Description

LARP6BLa-related protein 6B [Source:UniProtKB/Swiss-Prot;Acc:O80567]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.