CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES12460
KXG35258

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43970.1	EES12460	AT1G49760.1	21798944
AT2G43970.1	KXG35258	AT1G49760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G121000.2	Wheat	nucleus	62.17	65.52
TraesCS5D01G126900.3	Wheat	nucleus	62.17	65.38
Os12t0225100-01	Rice	nucleus	32.11	64.61
Zm00001d023987_P001	Maize	nucleus	62.37	62.24
TraesCS5A01G115200.1	Wheat	nucleus	58.49	61.51
HORVU5Hr1G029110.1	Barley	nucleus	57.67	61.04
EES08246	Sorghum	nucleus	53.78	54.68
GSMUA_Achr3P19230_001	Banana	nucleus	47.44	50.99
GSMUA_Achr6P18240_001	Banana	nucleus	47.65	50.76
VIT_05s0094g01400.t01	Wine grape	mitochondrion	32.72	49.23
VIT_09s0002g07980.t01	Wine grape	cytosol	6.54	47.06
GSMUA_Achr2P11420_001	Banana	mitochondrion	42.54	42.19
EES15258	Sorghum	nucleus	37.22	41.65
CDY17896	Canola	nucleus	38.24	41.28
KRH69036	Soybean	nucleus	39.47	40.55
KRG97304	Soybean	nucleus	37.42	39.1
Bra004795.1-P	Field mustard	nucleus	39.26	38.79
CDX79791	Canola	nucleus	39.26	38.4
Solyc08g015650.2.1	Tomato	nucleus	34.56	37.06
Solyc12g019000.1.1	Tomato	nucleus	34.76	35.94
PGSC0003DMT400064931	Potato	nucleus	34.15	35.91
AT2G43970.1	Thale cress	nucleus	37.63	33.76
Solyc12g096640.1.1	Tomato	nucleus, plastid	35.17	33.53
PGSC0003DMT400075259	Potato	nucleus	35.38	33.4
KXG38156	Sorghum	nucleus	28.43	29.57
EER97821	Sorghum	nucleus	30.67	28.85
KXG33403	Sorghum	nucleus	24.54	26.61

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:8058156	InterPro:Ataxin-2_C	UniProt:C5YTS6
EnsemblPlants:EES16897	ProteinID:EES16897	ProteinID:EES16897.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030529	GO:GO:1990904
InterPro:IPR000504	InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388	InterPro:La_HTH	InterPro:La_like_plant_RRM
InterPro:Lupus_La	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF05383	PFAM:PF07145	PRINTS:PR00302	PFscan:PS50102
PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF81	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00715
EnsemblPlantsGene:SORBI_3008G078300	SUPFAM:SSF46785	SUPFAM:SSF54928	unigene:Sbi.21662	UniParc:UPI0001A881AE	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	RefSeq:XP_002443059.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:12289970..12297954

Molecular Weight (calculated)

53198.9 Da

IEP (calculated)

8.144

GRAVY (calculated)

-0.663

Length

489 amino acids

Sequence
(BLAST)

001: MPQMDGPADQ IAAGWFAAEP AAERPVALPR TGSSSRLNAQ APEFVPRGPP SPAPAVVVPP PPQVIRMFAA PPPPPRAAFF AAPPPRPFEY YAPVAGRGGF
101: AAKEQQAPEP EPEAEMLPPA AVKAEPVVDG LDDEVVHKIT KQVEYYFSDI NLATTEHLMR FITKDPEGYV PISVIAGFKK VKASVHNNVM LAAALRTSSK
201: LVVSDDGKRV KRQEPFTESD LQELQSRIVV AENLPGDPSY QNLKKIFSAV GSVISIRTCY PQTPNGTGPA TNRSAKLDML FANKLHAFVE YETPEDAEKA
301: ILELNDEKNW RNGLRVRLLN TCTVKGAGKG KKGVHETDGN GEEDVSTSNH SNEKLFEESS QLLDVLPEHL FDENFNDKEV PKRGKGRGRG GRGRGRGNHQ
401: YNNNQHHQNN QQHYNHHGNN HLGGNRGSPH PVGTPPHNLI TKPEQYPQLP IGANKLPPGP RMPDGTRGFT MGRGKPQAVL PGLCAVGES

Best Arabidopsis Sequence Match ( AT2G43970.1 )
(BLAST)

001: MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE

Arabidopsis Description

LARP6BLa-related protein 6B [Source:UniProtKB/Swiss-Prot;Acc:O80567]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.