CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY51045
CDY54068

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43970.1	CDY51045	AT1G49760.1	21798944
AT2G43970.1	CDY54068	AT1G49760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79791	Canola	nucleus	79.47	72.0
Bra004795.1-P	Field mustard	nucleus	73.51	67.27
AT2G43970.1	Thale cress	nucleus	64.02	53.21
VIT_09s0002g07980.t01	Wine grape	cytosol	7.95	52.94
Os11t0248200-01	Rice	nucleus, plasma membrane	37.75	48.31
KRH69036	Soybean	nucleus	50.11	47.69
KRG97304	Soybean	nucleus	48.79	47.22
GSMUA_Achr3P19230_001	Banana	nucleus	44.37	44.18
TraesCS7D01G269000.1	Wheat	nucleus	37.09	42.75
Solyc08g015650.2.1	Tomato	nucleus	42.6	42.32
GSMUA_Achr6P18240_001	Banana	nucleus	42.83	42.27
TraesCS7B01G166700.1	Wheat	nucleus	36.64	42.24
TraesCS7A01G265700.1	Wheat	nucleus	36.64	42.24
PGSC0003DMT400064931	Potato	nucleus	42.16	41.08
HORVU7Hr1G056460.1	Barley	nucleus	35.32	41.03
Os08t0542900-01	Rice	nucleus	38.63	40.98
Solyc12g019000.1.1	Tomato	nucleus	42.38	40.59
Zm00001d007279_P001	Maize	nucleus	41.72	40.21
TraesCS4D01G084200.1	Wheat	nucleus	42.6	40.04
TraesCS5D01G126900.3	Wheat	nucleus	41.06	40.0
TraesCS4A01G229400.1	Wheat	nucleus	42.6	39.96
EES08246	Sorghum	nucleus	42.38	39.92
TraesCS5B01G121000.2	Wheat	nucleus	40.62	39.66
EES15258	Sorghum	nucleus	38.19	39.59
HORVU4Hr1G014800.1	Barley	nucleus	42.16	39.54
TraesCS4B01G087000.1	Wheat	nucleus	41.94	39.42
HORVU5Hr1G029110.1	Barley	nucleus	40.18	39.39
Zm00001d031707_P001	Maize	nucleus	37.31	39.3
GSMUA_Achr2P11420_001	Banana	mitochondrion	42.6	39.15
TraesCS5A01G115200.1	Wheat	nucleus	40.18	39.14
Os12t0225100-01	Rice	nucleus	20.53	38.27
EES16897	Sorghum	nucleus	41.28	38.24
Solyc12g096640.1.1	Tomato	nucleus, plastid	41.06	36.26
PGSC0003DMT400075259	Potato	nucleus	40.62	35.52
CDX82312	Canola	nucleus	30.68	32.25
CDY22991	Canola	nucleus	30.46	32.02
CDX92302	Canola	nucleus	30.46	31.15
CDX99268	Canola	nucleus	30.46	31.08
CDY68074	Canola	nucleus	25.39	29.49
Zm00001d023987_P001	Maize	nucleus	31.57	29.18
CDY33465	Canola	nucleus	24.5	28.39
CDY35155	Canola	nucleus	23.84	27.62
CDY03229	Canola	nucleus	23.62	27.51
Zm00001d020113_P001	Maize	cytosol	22.08	25.13

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	GO:A0A078FY01	UniProt:A0A078FY01	EnsemblPlants:CDY17896
ProteinID:CDY17896	ProteinID:CDY17896.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030529	GO:GO:1990904	EnsemblPlantsGene:GSBRNA2T00002239001
InterPro:IPR000504	InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388	InterPro:La_HTH	InterPro:La_like_plant_RRM
InterPro:Lupus_La	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF05383	PRINTS:PR00302	PFscan:PS50102	PFscan:PS50961
PANTHER:PTHR22792	PANTHER:PTHR22792:SF52	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00715	SUPFAM:SSF46785
SUPFAM:SSF54928	UniParc:UPI0004EE2ADB	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

BnaC04g03230DBnaC04g03230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FY01]

Coordinates

chrLK032079:+:370391..373326

Molecular Weight (calculated)

50429.6 Da

IEP (calculated)

7.942

GRAVY (calculated)

-1.025

Length

453 amino acids

Sequence
(BLAST)

001: MADQQTLDSD DLSHSTSSDP SLLRSLSSSR LNAGAPEFPH HHPHRFHHSR HQQNQHYVPA RSHQQEPDSV VKKSERRDHH KRESKSDQTT EAGASSVVID
101: PKTGLPEDTI QKIVNQVEYY FSDLNLATTD HLMRFISKDP EGYVPIQVVA SFKKVKAVVS GNSQLATVLQ NSAKLVVSED GKKVRRMNPV TETALEELQS
201: RIVIAENLPE DHCYQNLMKI FSTVGSVKNI RTCQPQITGN AVPPAARSAK SDGTLFSNKV HAFVEYETVE LAEKAVAELN EAGNWRSSLK VRLMLKPQTK
301: EPKQGQGRGR KGHDVEVEHE EDEATASEQQ QQPIEKLSEE CSGEWDTHVP EQAVIVGEEQ GNEKAAGQRK GRSRGRGKGR GRGQPHQNQN QNHNGRGNHH
401: NHHHQHQVGT PPSNNQMNSM EQQPKQQPPG PRMPDGTRGF SMGRGKPVTV QAD

Best Arabidopsis Sequence Match ( AT2G43970.1 )
(BLAST)

001: MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE

Arabidopsis Description

LARP6BLa-related protein 6B [Source:UniProtKB/Swiss-Prot;Acc:O80567]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.