Factsheet for Zm00001d031707_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003106_P003
Zm00001d005276_P007
Zm00001d019824_P004
Zm00001d025801_P005

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43970.1	Zm00001d003106_P003	AT1G49760.1	21798944
AT2G43970.1	Zm00001d005276_P007	AT1G49760.1	21798944
AT2G43970.1	Zm00001d019824_P004	AT1G49760.1	21798944
AT2G43970.1	Zm00001d025801_P005	AT1G49760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15258	Sorghum	nucleus	75.12	73.91
TraesCS7B01G166700.1	Wheat	nucleus	55.58	60.81
TraesCS7D01G269000.1	Wheat	nucleus	55.58	60.81
TraesCS7A01G265700.1	Wheat	nucleus	55.35	60.56
HORVU7Hr1G056460.1	Barley	nucleus	53.72	59.23
Os08t0542900-01	Rice	nucleus	57.91	58.31
VIT_09s0002g07980.t01	Wine grape	cytosol	8.14	51.47
Zm00001d020113_P001	Maize	cytosol	44.19	47.74
VIT_05s0094g01400.t01	Wine grape	mitochondrion	34.88	46.15
GSMUA_Achr6P18240_001	Banana	nucleus	44.42	41.61
GSMUA_Achr3P19230_001	Banana	nucleus	43.72	41.32
Zm00001d019729_P001	Maize	nucleus	8.37	40.0
Zm00001d007279_P001	Maize	nucleus	42.33	38.72
CDY17896	Canola	nucleus	39.3	37.31
KRG97304	Soybean	nucleus	39.77	36.54
KRH69036	Soybean	nucleus	40.23	36.34
GSMUA_Achr2P11420_001	Banana	mitochondrion	41.16	35.9
Solyc08g015650.2.1	Tomato	nucleus	36.05	33.99
Bra004795.1-P	Field mustard	nucleus	39.07	33.94
CDX79791	Canola	nucleus	38.84	33.4
PGSC0003DMT400064931	Potato	nucleus	35.81	33.12
Solyc12g019000.1.1	Tomato	nucleus	36.28	32.98
AT2G43970.1	Thale cress	nucleus	38.14	30.09
Zm00001d032397_P001	Maize	nucleus	28.6	29.78
Solyc12g096640.1.1	Tomato	nucleus, plastid	34.19	28.66
Zm00001d023987_P001	Maize	nucleus	32.09	28.16
Zm00001d018613_P004	Maize	nucleus	32.56	27.72
PGSC0003DMT400075259	Potato	nucleus	33.26	27.61
Zm00001d043418_P136	Maize	nucleus	24.88	23.26

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:103643076	Gene3D:3.30.70.330	MapMan:35.1	UniProt:A0A1D6KKU1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0030529	GO:GO:1990904	InterPro:IPR000504	InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388
InterPro:La_HTH	InterPro:Lupus_La	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:ONM03524.1	PFAM:PF05383	PRINTS:PR00302
PFscan:PS50102	PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF54	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00715	SUPFAM:SSF46785	SUPFAM:SSF54928	UniParc:UPI000220ABC4	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
EnsemblPlantsGene:Zm00001d031707	EnsemblPlants:Zm00001d031707_P001	EnsemblPlants:Zm00001d031707_T001	SEG:seg	:	:

Description

La-related protein 6B

Coordinates

chr1:+:199074702..199078961

Molecular Weight (calculated)

46973.5 Da

IEP (calculated)

7.220

GRAVY (calculated)

-0.865

Length

430 amino acids

Sequence
(BLAST)

001: MAQDDIPESS ASGSPTSSTP AARLNAAAPE FTPRSAAQHH GNNAHRRGPH HHHQPHHHPH YHPHQHYQPR HQHHQAQAED EGSAAATAED REGPAGAVQP
101: QHRLPEPEAR KLVKQVEFYF SDINLATTEH LMKFIAKDPD GFVPISVVAS FRKIREIVYD RSLLVAALRT SSELVVSEDG KHVKRLQPFN AEEVQSRIVV
201: AENLPEDQKH QTLMKIFSAV GNVKSIRTCY PQDISPAAAN RTSRIEMIFA NKLHSFVEYS TVEDAEKAVA EFGGGGNWRE GIRVRSLLGC LKHGLGQGRK
301: GGDEEYAADE DGPDTTDHPR DFGTDVTAQI SEAHFDHQAE DGTHDKGGMR QQGRGRGRGG RGRGRGQHYG HNSRDGHHPI GTPPSEHPAV PKPPPGPRMP
401: DGTKGFTMGR GKPLSITIDA AANPTTTDAA

Best Arabidopsis Sequence Match ( AT2G43970.1 )
(BLAST)

001: MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE

Arabidopsis Description

LARP6BLa-related protein 6B [Source:UniProtKB/Swiss-Prot;Acc:O80567]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.