Factsheet for AT2G43970.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004795.1-P	Field mustard	nucleus	64.59	71.11
CDY17896	Canola	nucleus	53.21	64.02
CDX79791	Canola	nucleus	56.15	61.2
VIT_09s0002g07980.t01	Wine grape	cytosol	6.42	51.47
KRG97304	Soybean	nucleus	43.67	50.85
Os11t0248200-01	Rice	nucleus, plasma membrane	32.66	50.28
KRH69036	Soybean	nucleus	42.75	48.95
GSMUA_Achr3P19230_001	Banana	nucleus	37.25	44.62
TraesCS7B01G166700.1	Wheat	nucleus	31.74	44.02
GSMUA_Achr6P18240_001	Banana	nucleus	36.88	43.79
TraesCS7A01G265700.1	Wheat	nucleus	31.38	43.51
TraesCS7D01G269000.1	Wheat	nucleus	31.38	43.51
TraesCS4D01G084200.1	Wheat	nucleus	38.35	43.36
Solyc12g019000.1.1	Tomato	nucleus	37.61	43.34
HORVU4Hr1G014800.1	Barley	nucleus	37.98	42.86
Solyc08g015650.2.1	Tomato	nucleus	35.78	42.76
TraesCS4B01G087000.1	Wheat	nucleus	37.8	42.74
TraesCS4A01G229400.1	Wheat	nucleus	37.61	42.44
TraesCS5D01G126900.3	Wheat	nucleus	35.96	42.15
Zm00001d007279_P001	Maize	nucleus	36.33	42.13
TraesCS5B01G121000.2	Wheat	nucleus	35.78	42.03
PGSC0003DMT400064931	Potato	nucleus	35.78	41.94
EES08246	Sorghum	nucleus	36.88	41.79
Os08t0542900-01	Rice	nucleus	32.48	41.45
TraesCS5A01G115200.1	Wheat	nucleus	35.05	41.08
HORVU7Hr1G056460.1	Barley	nucleus	29.36	41.03
HORVU5Hr1G029110.1	Barley	nucleus	34.5	40.69
EES15258	Sorghum	nucleus	32.29	40.27
Zm00001d031707_P001	Maize	nucleus	30.09	38.14
GSMUA_Achr2P11420_001	Banana	mitochondrion	34.13	37.73
EES16897	Sorghum	nucleus	33.76	37.63
Os12t0225100-01	Rice	nucleus	16.7	37.45
PGSC0003DMT400075259	Potato	nucleus	35.23	37.07
Solyc12g096640.1.1	Tomato	nucleus, plastid	34.13	36.26
Zm00001d023987_P001	Maize	nucleus	28.81	32.04
AT3G19090.2	Thale cress	nucleus	25.87	29.25
AT5G46250.1	Thale cress	nucleus	20.73	26.78
Zm00001d020113_P001	Maize	cytosol	18.35	25.13

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:819002	ProteinID:AAC23405.2	ProteinID:AEC10356.1
ProteinID:AEC10357.1	EMBL:AF332565	EMBL:AF367277	EMBL:AF375410	EMBL:AF412052	EMBL:AK319109
ArrayExpress:AT2G43970	EnsemblPlantsGene:AT2G43970	RefSeq:AT2G43970	TAIR:AT2G43970	RefSeq:AT2G43970-TAIR-G	EnsemblPlants:AT2G43970.1
TAIR:AT2G43970.1	EMBL:AY056238	EMBL:AY129474	Unigene:At.20070	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030529	GO:GO:1990904	InterPro:IPR006630
InterPro:IPR012677	InterPro:IPR036388	InterPro:La_HTH	InterPro:La_like_plant_RRM	InterPro:Lupus_La	RefSeq:NP_566004.1
RefSeq:NP_850406.1	InterPro:Nucleotide-bd_a/b_plait_sf	UniProt:O80567	PFAM:PF05383	PO:PO:0000013	PO:PO:0000037
PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PRINTS:PR00302	PFscan:PS50961
PANTHER:PTHR22792	PANTHER:PTHR22792:SF52	InterPro:RBD_domain_sf	SMART:SM00715	SUPFAM:SSF46785	SUPFAM:SSF54928
UniParc:UPI000009DB37	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

LARP6BLa-related protein 6B [Source:UniProtKB/Swiss-Prot;Acc:O80567]

Coordinates

chr2:-:18205235..18208218

Molecular Weight (calculated)

60592.5 Da

IEP (calculated)

8.195

GRAVY (calculated)

-1.061

Length

545 amino acids

Sequence
(BLAST)

001: MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.