Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G126900.3 | Wheat | nucleus | 98.06 | 97.85 |
| TraesCS5A01G115200.1 | Wheat | nucleus | 84.48 | 84.3 |
| HORVU5Hr1G029110.1 | Barley | nucleus | 81.9 | 82.25 |
| EES16897 | Sorghum | nucleus | 65.52 | 62.17 |
| Os12t0225100-01 | Rice | nucleus | 32.11 | 61.32 |
| TraesCS4B01G087000.1 | Wheat | nucleus | 57.97 | 55.81 |
| GSMUA_Achr3P19230_001 | Banana | nucleus | 51.94 | 52.97 |
| GSMUA_Achr6P18240_001 | Banana | nucleus | 51.94 | 52.51 |
| VIT_05s0094g01400.t01 | Wine grape | mitochondrion | 36.42 | 52.0 |
| VIT_09s0002g07980.t01 | Wine grape | cytosol | 7.33 | 50.0 |
| Zm00001d023987_P001 | Maize | nucleus | 50.86 | 48.16 |
| TraesCS7B01G166700.1 | Wheat | nucleus | 38.15 | 45.04 |
| KRG97304 | Soybean | nucleus | 42.89 | 42.52 |
| KRH69036 | Soybean | nucleus | 43.1 | 42.02 |
| GSMUA_Achr2P11420_001 | Banana | mitochondrion | 44.4 | 41.78 |
| CDY17896 | Canola | nucleus | 39.66 | 40.62 |
| CDX79791 | Canola | nucleus | 43.1 | 40.0 |
| Bra004795.1-P | Field mustard | nucleus | 42.46 | 39.8 |
| Solyc08g015650.2.1 | Tomato | nucleus | 38.36 | 39.04 |
| Solyc12g019000.1.1 | Tomato | nucleus | 38.79 | 38.05 |
| PGSC0003DMT400064931 | Potato | nucleus | 37.28 | 37.2 |
| AT2G43970.1 | Thale cress | nucleus | 42.03 | 35.78 |
| PGSC0003DMT400075259 | Potato | nucleus | 38.36 | 34.36 |
| Solyc12g096640.1.1 | Tomato | nucleus, plastid | 37.07 | 33.53 |
| TraesCS2B01G285700.1 | Wheat | nucleus | 30.82 | 32.06 |
| TraesCS3B01G328600.1 | Wheat | nucleus | 28.45 | 26.94 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:3.30.70.330 | MapMan:35.1 | InterPro:Ataxin-2_C | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:1990904 |
| InterPro:IPR000504 | InterPro:IPR006630 | InterPro:IPR012677 | InterPro:IPR036388 | InterPro:La_HTH | InterPro:La_like_plant_RRM |
| InterPro:Lupus_La | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF05383 | PFAM:PF07145 | PRINTS:PR00302 |
| PFscan:PS50102 | PFscan:PS50961 | PANTHER:PTHR22792 | PANTHER:PTHR22792:SF81 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00715 | SUPFAM:SSF46785 | SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCS5B01G121000 | EnsemblPlants:TraesCS5B01G121000.2 | InterPro:WH-like_DNA-bd_sf |
| InterPro:WH_DNA-bd_sf | TIGR:cd08033 | TIGR:cd12288 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5B:+:215873038..215890483
Molecular Weight (calculated)
50556.0 Da
IEP (calculated)
8.480
GRAVY (calculated)
-0.554
Length
464 amino acids
Sequence
(BLAST)
(BLAST)
001: MPQQEVPDQI AAGWFAVEAP ERPGSLQRSG SNSRLNAQAP EFVPRVAAVV PPPQPPPAVI RVFAVPSPPP RAAFFAAPPP PPSFEFFAPV RVGGAFVAEE
101: PAPEMERATP PVAEPAVDGL TDEVVQKITK QVEYYFSDIN LATTEHLMRF ISKDPQGYVP ISVIAGFKKI KALVHNNPML AAALRTSSKL VVSGDGKRVK
201: RRHPFTESDM QEFQSRIVVA ENLPGDPSYQ NLMKIFSAVG SVRTIRTCYP QTPNGPGPAT NRSAKLDMLF ANKLHAFVEY ETHEDAEKAI LELNDERNWR
301: NGLRSRLLNT CMTKGPVKGK TGGHEGDGNG EDDVSTSNQS NERQLEGSFQ LADVLPEHLF DENSDKQGPK HGKGRGCCGK GRGRGYHQLN NYHHHIHNGS
401: NHHQVINSRG SHPVGTPPNT QLIMVEQLLP VANKQPPGPR MPDGTRGFAM GRGKPSSASC AVEL
101: PAPEMERATP PVAEPAVDGL TDEVVQKITK QVEYYFSDIN LATTEHLMRF ISKDPQGYVP ISVIAGFKKI KALVHNNPML AAALRTSSKL VVSGDGKRVK
201: RRHPFTESDM QEFQSRIVVA ENLPGDPSYQ NLMKIFSAVG SVRTIRTCYP QTPNGPGPAT NRSAKLDMLF ANKLHAFVEY ETHEDAEKAI LELNDERNWR
301: NGLRSRLLNT CMTKGPVKGK TGGHEGDGNG EDDVSTSNQS NERQLEGSFQ LADVLPEHLF DENSDKQGPK HGKGRGCCGK GRGRGYHQLN NYHHHIHNGS
401: NHHQVINSRG SHPVGTPPNT QLIMVEQLLP VANKQPPGPR MPDGTRGFAM GRGKPSSASC AVEL
001: MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE
Arabidopsis Description
LARP6BLa-related protein 6B [Source:UniProtKB/Swiss-Prot;Acc:O80567]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.