Skip to main content
crop-pal logo
Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3A01G293900.1 Wheat nucleus 83.67 83.67
Zm00001d019729_P001 Maize nucleus 14.29 77.78
TraesCS3D01G293700.1 Wheat nucleus 65.1 66.18
HORVU3Hr1G072800.1 Barley nucleus 55.31 53.56
VIT_10s0003g03190.t01 Wine grape nucleus 30.82 44.15
KXG33403 Sorghum nucleus 39.39 42.79
Zm00001d043418_P136 Maize nucleus 39.8 42.39
Solyc02g070550.2.1 Tomato nucleus 30.82 40.37
PGSC0003DMT400054517 Potato nucleus 31.43 39.09
KRH11196 Soybean nucleus 31.43 38.02
KRH21060 Soybean nucleus 31.02 38.0
CDY35155 Canola nucleus 29.59 37.08
Bra017566.1-P Field mustard nucleus 28.98 36.69
GSMUA_Achr1P13840_001 Banana nucleus, plastid 33.67 36.1
CDY03229 Canola nucleus 28.37 35.73
Bra025027.1-P Field mustard nucleus 28.16 35.29
CDY68074 Canola nucleus 27.14 34.1
CDY33465 Canola nucleus 26.73 33.5
AT5G46250.1 Thale cress nucleus 27.35 31.75
TraesCS7B01G166700.1 Wheat nucleus 24.08 30.03
TraesCS2B01G285700.1 Wheat nucleus 26.73 29.37
TraesCS5B01G121000.2 Wheat nucleus 26.94 28.45
TraesCS4B01G087000.1 Wheat nucleus 27.14 27.59
Protein Annotations
Gene3D:1.10.10.10Gene3D:3.30.70.330MapMan:35.1GO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139
GO:GO:0006396GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:1990904InterPro:IPR000504
InterPro:IPR006630InterPro:IPR012677InterPro:IPR036388InterPro:La_HTHInterPro:Lupus_LaInterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF05383PRINTS:PR00302PFscan:PS50102PFscan:PS50961PANTHER:PTHR22792PANTHER:PTHR22792:SF52
InterPro:RBD_domain_sfInterPro:RRM_domSMART:SM00715SUPFAM:SSF46785SUPFAM:SSF54928EnsemblPlantsGene:TraesCS3B01G328600
EnsemblPlants:TraesCS3B01G328600.1InterPro:WH-like_DNA-bd_sfInterPro:WH_DNA-bd_sfTIGR:cd08033SEG:seg:
Description
No Description!
Coordinates
chr3B:-:530257885..530267842
Molecular Weight (calculated)
52178.6 Da
IEP (calculated)
5.297
GRAVY (calculated)
-0.464
Length
490 amino acids
Sequence
(BLAST)
001: MDGQAPHPIA VAPESLPHPP PTLETEAEDD PVVVPDTSDA ASSEPSKVGA LSTSPLIKAE DDPVVVPDSV EPASSVASVV SAGGVVPLPP PSRPLEAEED
101: PLIVPDTSEA LPLEAPNVGT GSVVPLLPSP PLEAEDDPLI VPVIDASSEA SDVVASGVVL TDELRDKIVK QVEYYFSDEN LPTDEFMLKF VMKNKEGLGN
201: VPLGVIASFR KMKKLVQDHS TIEAALRTSS KLVVSSNGKR VRRLHPLPCN ELKDVKKRTV VVENLPLDFS LESIQEKFGS VGKIMKIAIH DPHAVGESAA
301: SKKPDIMLSN KVHAIVEYEA VEAAEKAVAT LNDERNWRTG MRVILLAKRS VVGSGKNIQS SKENHGTCLR KNNEGQFSKE VQQSVSEKNG GADSGEVASD
401: KENVNSDVNH EEVRQHQRAN ASGGRKGRYR SQGKGLSGQG HGSSPTIPGS DSANKPISGP RMPDGTRGFT MGRGRSLPLP KAEKAQKTEE
Best Arabidopsis Sequence Match ( AT5G46250.1 )
(BLAST)
001: MSSLPLRSGE KMESPSISDA VPLHAPEDAT ADFSQPQSPL HEVDSFPVTE SSDDVVVNVS EIPNLSPSDD DFDHERNSGE DRDQDHGENP VETDGVVVPI
101: DELNQKIIRQ VEYYFSDENL PTDKFLLNAM KRNKKGFVPI STIATFHKMK KLTRDHALIV SALKESSFLV VSADEKKVKR LSPLPEIRDP KIFTVLVENL
201: PEDHSNENIR EIFGKAGSIK SVSICDPNAV EESEKGGKKE NFIRTRLHAF VEYETVEAAE KAAATLNNEQ DWRNGLRVKL LEQAAGKFAQ RRPARREVDK
301: EKDTTGRVHD QTGGEKNKKT REHQNHRLHH SDNPADDDGG NHQKDKNGNK GRVVGQGRRQ NHQGGNGIGH GTASSSSHPN YHPVEVSKRP PGPRMPDGTR
401: GFTMGRGKAI PPPTSTQTSH EV
Arabidopsis Description
LARP6ALa-related protein 6A [Source:UniProtKB/Swiss-Prot;Acc:Q94A38]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.