Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G46250.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT5G46250.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT5G46250.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d019729_P001 | Maize | nucleus | 14.52 | 77.78 |
| TraesCS3B01G328600.1 | Wheat | nucleus | 66.18 | 65.1 |
| TraesCS3A01G293900.1 | Wheat | nucleus | 66.18 | 65.1 |
| HORVU3Hr1G072800.1 | Barley | nucleus | 52.7 | 50.2 |
| VIT_10s0003g03190.t01 | Wine grape | nucleus | 31.12 | 43.86 |
| Zm00001d043418_P136 | Maize | nucleus | 40.87 | 42.83 |
| KXG33403 | Sorghum | nucleus | 39.83 | 42.57 |
| Solyc02g070550.2.1 | Tomato | nucleus | 31.74 | 40.91 |
| PGSC0003DMT400054517 | Potato | nucleus | 31.95 | 39.09 |
| KRH11196 | Soybean | nucleus | 32.78 | 39.01 |
| KRH21060 | Soybean | nucleus | 32.37 | 39.0 |
| GSMUA_Achr1P13840_001 | Banana | nucleus, plastid | 35.68 | 37.64 |
| CDY35155 | Canola | nucleus | 29.46 | 36.32 |
| Bra017566.1-P | Field mustard | nucleus | 28.84 | 35.92 |
| CDY68074 | Canola | nucleus | 28.01 | 34.62 |
| CDY03229 | Canola | nucleus | 27.8 | 34.45 |
| CDY33465 | Canola | nucleus | 26.97 | 33.25 |
| Bra025027.1-P | Field mustard | nucleus | 26.97 | 33.25 |
| AT5G46250.1 | Thale cress | nucleus | 27.59 | 31.52 |
| TraesCS7D01G269000.1 | Wheat | nucleus | 24.69 | 30.28 |
| TraesCS2D01G265900.1 | Wheat | nucleus | 26.56 | 28.64 |
| TraesCS5D01G126900.3 | Wheat | nucleus | 27.39 | 28.39 |
| TraesCS4D01G084200.1 | Wheat | nucleus | 26.97 | 26.97 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:3.30.70.330 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:1990904 | InterPro:IPR000504 |
| InterPro:IPR006630 | InterPro:IPR012677 | InterPro:IPR036388 | InterPro:La_HTH | InterPro:Lupus_La | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFAM:PF05383 | PRINTS:PR00302 | PFscan:PS50102 | PFscan:PS50961 | PANTHER:PTHR22792 |
| PANTHER:PTHR22792:SF52 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00715 | SUPFAM:SSF46785 | SUPFAM:SSF54928 |
| EnsemblPlantsGene:TraesCS3D01G293700 | EnsemblPlants:TraesCS3D01G293700.1 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | TIGR:cd08033 | SEG:seg |
Description
No Description!
Coordinates
chr3D:-:404010282..404015073
Molecular Weight (calculated)
51503.7 Da
IEP (calculated)
5.122
GRAVY (calculated)
-0.487
Length
482 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGQAPHPVA VAPESLPQPP PRLETEAEDD PVVVPDASDA ASSEPSKVGA LSTSPLIKAE DDPVVVPDSV EPASSEASVV SAGGVVPPSR PLEAEEDPLI
101: VPDTSEATNV GTGSVVPLLP SPPLEAEDDP LIVPVIDASS EASDVVTSGV VLTDELRDKI VKQVEYYFSD ENLPTDEFML KFVMKNKEGL GNVPLGVIAS
201: FRKMKKLVQD HSTIEAALRT SSKLVVSSNG KRVRRLHPLP CNELKDVKKR TVVVENLPLD FSLESIQEKF GSVGKIMKIT IHDPHAVGES AASKKPDFML
301: SNKVHAIVEY EAVEAAEKAV ATLNDERNWR TGMRVILLAK RSVVGSGKNI QSSKENHGTC LRKNNEGQFS KEVQQSVSEK NGGADSGEVA SDKENVNSDV
401: NHEEVRQHQR ANASGGRKGR YRIQGKGLSG QGHGSSPTIP GSDSASKPIS GPRMPDGTRG FTMGRGRLLP LPEAEKAQKT EE
101: VPDTSEATNV GTGSVVPLLP SPPLEAEDDP LIVPVIDASS EASDVVTSGV VLTDELRDKI VKQVEYYFSD ENLPTDEFML KFVMKNKEGL GNVPLGVIAS
201: FRKMKKLVQD HSTIEAALRT SSKLVVSSNG KRVRRLHPLP CNELKDVKKR TVVVENLPLD FSLESIQEKF GSVGKIMKIT IHDPHAVGES AASKKPDFML
301: SNKVHAIVEY EAVEAAEKAV ATLNDERNWR TGMRVILLAK RSVVGSGKNI QSSKENHGTC LRKNNEGQFS KEVQQSVSEK NGGADSGEVA SDKENVNSDV
401: NHEEVRQHQR ANASGGRKGR YRIQGKGLSG QGHGSSPTIP GSDSASKPIS GPRMPDGTRG FTMGRGRLLP LPEAEKAQKT EE
001: MSSLPLRSGE KMESPSISDA VPLHAPEDAT ADFSQPQSPL HEVDSFPVTE SSDDVVVNVS EIPNLSPSDD DFDHERNSGE DRDQDHGENP VETDGVVVPI
101: DELNQKIIRQ VEYYFSDENL PTDKFLLNAM KRNKKGFVPI STIATFHKMK KLTRDHALIV SALKESSFLV VSADEKKVKR LSPLPEIRDP KIFTVLVENL
201: PEDHSNENIR EIFGKAGSIK SVSICDPNAV EESEKGGKKE NFIRTRLHAF VEYETVEAAE KAAATLNNEQ DWRNGLRVKL LEQAAGKFAQ RRPARREVDK
301: EKDTTGRVHD QTGGEKNKKT REHQNHRLHH SDNPADDDGG NHQKDKNGNK GRVVGQGRRQ NHQGGNGIGH GTASSSSHPN YHPVEVSKRP PGPRMPDGTR
401: GFTMGRGKAI PPPTSTQTSH EV
101: DELNQKIIRQ VEYYFSDENL PTDKFLLNAM KRNKKGFVPI STIATFHKMK KLTRDHALIV SALKESSFLV VSADEKKVKR LSPLPEIRDP KIFTVLVENL
201: PEDHSNENIR EIFGKAGSIK SVSICDPNAV EESEKGGKKE NFIRTRLHAF VEYETVEAAE KAAATLNNEQ DWRNGLRVKL LEQAAGKFAQ RRPARREVDK
301: EKDTTGRVHD QTGGEKNKKT REHQNHRLHH SDNPADDDGG NHQKDKNGNK GRVVGQGRRQ NHQGGNGIGH GTASSSSHPN YHPVEVSKRP PGPRMPDGTR
401: GFTMGRGKAI PPPTSTQTSH EV
Arabidopsis Description
LARP6ALa-related protein 6A [Source:UniProtKB/Swiss-Prot;Acc:Q94A38]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.