CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03376
KRH42483
KRH54462
KRH57009
KRH58580
KRH63457

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46250.1	KRH42483	AT2G01950.1	19000166
AT5G46250.1	KRH58580	AT2G01950.1	19000166
AT5G46250.1	KRH03376	AT3G48100.1	18642946
AT5G46250.1	KRH54462	AT3G48100.1	18642946
AT5G46250.1	KRH57009	AT3G48100.1	18642946
AT5G46250.1	KRH63457	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21060	Soybean	nucleus	75.06	76.0
VIT_10s0003g03190.t01	Wine grape	nucleus	46.67	55.26
Zm00001d019729_P001	Maize	nucleus	11.85	53.33
Solyc02g070550.2.1	Tomato	nucleus	44.2	47.86
PGSC0003DMT400054517	Potato	nucleus	44.69	45.94
CDY03229	Canola	nucleus	39.51	41.13
Bra017566.1-P	Field mustard	nucleus	39.26	41.09
CDY35155	Canola	nucleus	39.26	40.66
CDY68074	Canola	nucleus	38.02	39.49
AT5G46250.1	Thale cress	nucleus	40.99	39.34
Bra025027.1-P	Field mustard	nucleus	37.78	39.13
CDY33465	Canola	nucleus	37.78	39.13
TraesCS3D01G293700.1	Wheat	nucleus	39.01	32.78
GSMUA_Achr1P13840_001	Banana	nucleus, plastid	36.3	32.17
Zm00001d043418_P136	Maize	nucleus	36.3	31.96
KXG33403	Sorghum	nucleus	35.31	31.71
TraesCS3B01G328600.1	Wheat	nucleus	38.02	31.43
HORVU3Hr1G072800.1	Barley	nucleus	38.52	30.83
TraesCS3A01G293900.1	Wheat	nucleus	37.28	30.82
KRH50235	Soybean	nucleus	29.88	30.33
KRH71184	Soybean	nucleus	29.63	29.7
KRG97304	Soybean	nucleus	31.11	26.92
KRH69036	Soybean	nucleus	30.12	25.63

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100807619	Gene3D:3.30.70.330	MapMan:35.1	EMBL:ACUP02009190	EMBL:BT094503
UniProt:C6TAG6	EnsemblPlantsGene:GLYMA_15G094800	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030529	GO:GO:1990904	InterPro:IPR000504
InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388	EnsemblPlants:KRH11196	ProteinID:KRH11196	ProteinID:KRH11196.1
InterPro:La_HTH	InterPro:La_like_plant_RRM	InterPro:Lupus_La	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF05383
PRINTS:PR00302	PFscan:PS50102	PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF52	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SMART:SM00715	SUPFAM:SSF46785	SUPFAM:SSF54928	UniParc:UPI0001B16187
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:7397268..7401947

Molecular Weight (calculated)

45342.5 Da

IEP (calculated)

6.561

GRAVY (calculated)

-0.951

Length

405 amino acids

Sequence
(BLAST)

001: MEGGEQVLPS ATTVAAAGYP NVSPPPLADP VGASDLAAAA SDDVVAEPEI HALISDEEHD HDHDHEHEHE HDHDLEHDHE HEHDHHEDRD DHAAVAAVSL
101: EDLKLKIIKQ VEYYFSDENL PTDKYLLGFV KRNKEGFVPV SVIASFRKIK KLTRDHAFIV AALKESSLLV VSGDGKRVKR LNPLRFNESR DHKLYTVLVE
201: NLPEDHSRKN IQQIFHEAGN IKRITIHDPH STSESTRHIK QEMLISNKLH ALVEYETIEA AEKAVAMLNN EQDWRNGMRV KLLKGMGTYG HKKQAWKGSH
301: SEKNSSRHVS EQTGDEENHG SNEHREDAHE EEDGDHLSKD KGGQRYRNQG RSRKHKYRAG NGMGHGSTPS THAAEASKPP PGPRMPDGTR GFAIGRGRFP
401: VPASN

Best Arabidopsis Sequence Match ( AT5G46250.1 )
(BLAST)

001: MSSLPLRSGE KMESPSISDA VPLHAPEDAT ADFSQPQSPL HEVDSFPVTE SSDDVVVNVS EIPNLSPSDD DFDHERNSGE DRDQDHGENP VETDGVVVPI
101: DELNQKIIRQ VEYYFSDENL PTDKFLLNAM KRNKKGFVPI STIATFHKMK KLTRDHALIV SALKESSFLV VSADEKKVKR LSPLPEIRDP KIFTVLVENL
201: PEDHSNENIR EIFGKAGSIK SVSICDPNAV EESEKGGKKE NFIRTRLHAF VEYETVEAAE KAAATLNNEQ DWRNGLRVKL LEQAAGKFAQ RRPARREVDK
301: EKDTTGRVHD QTGGEKNKKT REHQNHRLHH SDNPADDDGG NHQKDKNGNK GRVVGQGRRQ NHQGGNGIGH GTASSSSHPN YHPVEVSKRP PGPRMPDGTR
401: GFTMGRGKAI PPPTSTQTSH EV

Arabidopsis Description

LARP6ALa-related protein 6A [Source:UniProtKB/Swiss-Prot;Acc:Q94A38]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.