CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU92006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46250.1	OQU92006	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019729_P001	Maize	nucleus	17.52	87.78
Zm00001d043418_P136	Maize	nucleus	56.54	55.43
VIT_10s0003g03190.t01	Wine grape	nucleus	31.49	41.52
TraesCS3D01G293700.1	Wheat	nucleus	42.57	39.83
TraesCS3B01G328600.1	Wheat	nucleus	42.79	39.39
Solyc02g070550.2.1	Tomato	nucleus	32.37	39.04
TraesCS3A01G293900.1	Wheat	nucleus	42.35	38.98
HORVU3Hr1G072800.1	Barley	nucleus	42.57	37.94
PGSC0003DMT400054517	Potato	nucleus	31.71	36.29
KRH21060	Soybean	nucleus	31.93	36.0
CDY03229	Canola	nucleus	31.04	35.99
KRH11196	Soybean	nucleus	31.71	35.31
Bra017566.1-P	Field mustard	nucleus	29.93	34.88
GSMUA_Achr1P13840_001	Banana	nucleus, plastid	35.26	34.79
CDY35155	Canola	nucleus	30.16	34.78
CDY68074	Canola	nucleus	28.82	33.33
Bra025027.1-P	Field mustard	nucleus	28.6	32.99
CDY33465	Canola	nucleus	28.38	32.74
AT5G46250.1	Thale cress	nucleus	27.05	28.91
EES15258	Sorghum	nucleus	25.28	26.09
EES16897	Sorghum	nucleus	26.61	24.54
EES08246	Sorghum	nucleus	26.16	24.53
KXG38156	Sorghum	nucleus	22.84	21.91
EER97821	Sorghum	nucleus	23.95	20.77

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:8079405	UniProt:A0A1B6Q665	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0030529	GO:GO:1990904	InterPro:IPR000504	InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388
EnsemblPlants:KXG33403	ProteinID:KXG33403	ProteinID:KXG33403.1	InterPro:La_HTH	InterPro:La_like_plant_RRM	InterPro:Lupus_La
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF05383	PRINTS:PR00302	PFscan:PS50102	PFscan:PS50961	PANTHER:PTHR22792
PANTHER:PTHR22792:SF52	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM00715	EnsemblPlantsGene:SORBI_3003G300300
SUPFAM:SSF46785	SUPFAM:SSF54928	unigene:Sbi.3396	UniParc:UPI0001A85B38	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
RefSeq:XP_002453408.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:63130339..63137370

Molecular Weight (calculated)

49383.2 Da

IEP (calculated)

5.427

GRAVY (calculated)

-0.680

Length

451 amino acids

Sequence
(BLAST)

001: MDGQAPPLLD AVVPEPLAAG DELHPPRPVE VEDALHSGMD GQAPHLDGVA RDPLTVSDEP QPTVEVAEEH AIPVAHDIAK GEVVEEDALP VASDIVKGEV
101: VEEDALPVAT DIINDASSEV PEAGSGGVVL TDELRDRIVK QVEYYFSDEN LPTDEFMLKY VKKNKKGFVP IETIASFRRM KKLVQDLSVI EAALRTSPKL
201: VVSSDGKRVR RLHPLPHNEL KDSKKSTVLV ENLPPDFSME SIQEKFSTVG KVVKVTINDP ELVKESSTAK KPDFNLSSKV HVLVEYEAVE AAEKAVTVLS
301: DESNWRTGMK VRLLSKQSVM GSGKYNKPSK ENQDAVSKKI DQNQHSKEDQ RITSEKISNA DAVGSAKDKE NLKSVFTTET EHHDQKPNSR GRKGRYKGQG
401: QMQQNTNKQG SSGSESLNKP IPGPRMPDGT RGFTLGRGKS LPLQKSDKAE E

Best Arabidopsis Sequence Match ( AT5G46250.1 )
(BLAST)

001: MSSLPLRSGE KMESPSISDA VPLHAPEDAT ADFSQPQSPL HEVDSFPVTE SSDDVVVNVS EIPNLSPSDD DFDHERNSGE DRDQDHGENP VETDGVVVPI
101: DELNQKIIRQ VEYYFSDENL PTDKFLLNAM KRNKKGFVPI STIATFHKMK KLTRDHALIV SALKESSFLV VSADEKKVKR LSPLPEIRDP KIFTVLVENL
201: PEDHSNENIR EIFGKAGSIK SVSICDPNAV EESEKGGKKE NFIRTRLHAF VEYETVEAAE KAAATLNNEQ DWRNGLRVKL LEQAAGKFAQ RRPARREVDK
301: EKDTTGRVHD QTGGEKNKKT REHQNHRLHH SDNPADDDGG NHQKDKNGNK GRVVGQGRRQ NHQGGNGIGH GTASSSSHPN YHPVEVSKRP PGPRMPDGTR
401: GFTMGRGKAI PPPTSTQTSH EV

Arabidopsis Description

LARP6ALa-related protein 6A [Source:UniProtKB/Swiss-Prot;Acc:Q94A38]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.