CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES12460
KXG35258

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43970.1	EES12460	AT1G49760.1	21798944
AT2G43970.1	KXG35258	AT1G49760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031707_P001	Maize	nucleus	73.91	75.12
TraesCS7B01G166700.1	Wheat	nucleus	54.69	60.81
TraesCS7D01G269000.1	Wheat	nucleus	54.46	60.56
TraesCS7A01G265700.1	Wheat	nucleus	54.0	60.05
HORVU7Hr1G056460.1	Barley	nucleus	52.86	59.23
Os08t0542900-01	Rice	nucleus	56.52	57.85
VIT_09s0002g07980.t01	Wine grape	cytosol	8.24	52.94
Zm00001d020113_P001	Maize	cytosol	46.0	50.5
VIT_05s0094g01400.t01	Wine grape	mitochondrion	34.55	46.46
GSMUA_Achr6P18240_001	Banana	nucleus	44.85	42.7
GSMUA_Achr3P19230_001	Banana	nucleus	43.94	42.2
EES08246	Sorghum	nucleus	42.56	38.67
CDY17896	Canola	nucleus	39.59	38.19
EES16897	Sorghum	nucleus	41.65	37.22
GSMUA_Achr2P11420_001	Banana	mitochondrion	41.19	36.51
CDX79791	Canola	nucleus	41.19	36.0
KRG97304	Soybean	nucleus	37.99	35.47
Bra004795.1-P	Field mustard	nucleus	40.05	35.35
KRH69036	Soybean	nucleus	38.44	35.29
Solyc08g015650.2.1	Tomato	nucleus	35.47	33.99
PGSC0003DMT400064931	Potato	nucleus	35.47	33.33
Solyc12g019000.1.1	Tomato	nucleus	35.01	32.35
AT2G43970.1	Thale cress	nucleus	40.27	32.29
Solyc12g096640.1.1	Tomato	nucleus, plastid	35.47	30.21
PGSC0003DMT400075259	Potato	nucleus	33.87	28.57
KXG38156	Sorghum	nucleus	30.21	28.09
EER97821	Sorghum	nucleus	33.41	28.08
KXG33403	Sorghum	nucleus	26.09	25.28

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:8060902	UniProt:C5YH87	EnsemblPlants:EES15258
ProteinID:EES15258	ProteinID:EES15258.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030529	GO:GO:1990904	InterPro:IPR000504
InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388	InterPro:La_HTH	InterPro:Lupus_La	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF05383	PRINTS:PR00302	PFscan:PS50102	PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF54
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00715	EnsemblPlantsGene:SORBI_3007G183700	SUPFAM:SSF46785	SUPFAM:SSF54928
UniParc:UPI0001A87EE6	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_002445763.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:-:61684513..61688901

Molecular Weight (calculated)

47709.0 Da

IEP (calculated)

7.145

GRAVY (calculated)

-0.915

Length

437 amino acids

Sequence
(BLAST)

001: MAQDDIPEST ASGSSSSSAS SAPVARLNAA APEFTPRSAT QHHNHGNNPH RRGPHHHHQQ HHHHHYHHHQ PHQHYQPRHQ HHQAEDEGSA AATAEDREGP
101: AGAGQAQQHR LPEPEARKLV KQVEFYFSDI NLATTEHLMK FITKDPDGFV PISVVASFRK IREIVYDRSL LVAALRASSE LVVSEDGKQV KRSQPFNAEE
201: VQSRIVVAEN LPEDQKHQTL MKIFSAVGSV KSIRTCYPQD VAAAAANKTS RIEMIFANKL HAFVEYSTVE DAEKAVAEFG GGGNWRDGIR VRSLLGCLKH
301: GLGQGRKGGD EEYAADEDGP DTTDHQHDYG TDVAAQNSEA HFDHQAEDGT LDKGGMRQQG RGRGRGGRGR GRGQYYGYNN RDAHHPIGTP PSEHPAVPKP
401: PPGPRMPDGT KGFTMGRGKP LNPTTDAAAA NPTTDAA

Best Arabidopsis Sequence Match ( AT2G43970.1 )
(BLAST)

001: MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE

Arabidopsis Description

LARP6BLa-related protein 6B [Source:UniProtKB/Swiss-Prot;Acc:O80567]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.