Factsheet for Solyc12g096640.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
nucleus 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g107870.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43970.1	Solyc01g107870.2.1	AT1G49760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075259	Potato	nucleus	59.45	58.88
VIT_09s0002g07980.t01	Wine grape	cytosol	7.02	52.94
VIT_05s0094g01400.t01	Wine grape	mitochondrion	32.94	52.0
Solyc08g015650.2.1	Tomato	nucleus	41.13	46.27
Solyc12g019000.1.1	Tomato	nucleus	40.74	44.19
Os11t0248200-01	Rice	nucleus, plasma membrane	29.63	42.94
CDY17896	Canola	nucleus	36.26	41.06
KRG97304	Soybean	nucleus	37.04	40.6
KRH69036	Soybean	nucleus	37.62	40.55
GSMUA_Achr3P19230_001	Banana	nucleus	34.7	39.12
TraesCS4D01G084200.1	Wheat	nucleus	36.06	38.38
GSMUA_Achr6P18240_001	Banana	nucleus	33.92	37.91
CDX79791	Canola	nucleus	36.84	37.8
TraesCS4B01G087000.1	Wheat	nucleus	35.48	37.76
Bra004795.1-P	Field mustard	nucleus	36.06	37.37
TraesCS4A01G229400.1	Wheat	nucleus	35.09	37.27
TraesCS5D01G126900.3	Wheat	nucleus	33.72	37.2
TraesCS5B01G121000.2	Wheat	nucleus	33.53	37.07
HORVU5Hr1G029110.1	Barley	nucleus	33.33	37.01
TraesCS5A01G115200.1	Wheat	nucleus	33.53	36.99
TraesCS7B01G166700.1	Wheat	nucleus	28.27	36.9
HORVU4Hr1G014800.1	Barley	nucleus	34.7	36.85
TraesCS7D01G269000.1	Wheat	nucleus	28.07	36.64
EES08246	Sorghum	nucleus	34.31	36.59
Zm00001d007279_P001	Maize	nucleus	33.14	36.17
TraesCS7A01G265700.1	Wheat	nucleus	27.68	36.13
HORVU7Hr1G056460.1	Barley	nucleus	27.29	35.9
Os08t0542900-01	Rice	nucleus	29.82	35.83
EES15258	Sorghum	nucleus	30.21	35.47
EES16897	Sorghum	nucleus	33.53	35.17
Solyc01g108310.2.1	Tomato	nucleus	26.9	34.33
Zm00001d031707_P001	Maize	nucleus	28.66	34.19
AT2G43970.1	Thale cress	nucleus	36.26	34.13
GSMUA_Achr2P11420_001	Banana	mitochondrion	32.16	33.47
Solyc10g050550.1.1	Tomato	nucleus	25.93	32.28
Os12t0225100-01	Rice	nucleus	15.2	32.1
Solyc02g070550.2.1	Tomato	nucleus	22.61	31.02
Zm00001d023987_P001	Maize	nucleus	25.54	26.73
Zm00001d020113_P001	Maize	cytosol	16.76	21.61

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030529	GO:GO:1990904
InterPro:IPR000504	InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388	UniProt:K4DHD7	InterPro:La_HTH
InterPro:La_like_plant_RRM	InterPro:Lupus_La	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF05383	PRINTS:PR00302	PFscan:PS50102
PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF52	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00715
SUPFAM:SSF46785	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc12g096640.1	EnsemblPlants:Solyc12g096640.1.1	UniParc:UPI0002769D4C	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:-:65466535..65472251

Molecular Weight (calculated)

55873.0 Da

IEP (calculated)

9.016

GRAVY (calculated)

-0.429

Length

513 amino acids

Sequence
(BLAST)

001: MAIEHDTLFL DSLNSTATSS SASLDLDHPF ESTSSSPLSP SLTKLNARAI AFIPRSSSSP SLSSAMLAKS SSSPSLATMS HPNSSRANLN RPESRIGPGS
101: GPVNGQTVLH LIATPSAAFH QITTHVPVQN YIYASQLPVQ YPYAGGIGRG FVDHGGMPAV VVIGADSERL SDEACQKIIN QVEFYFSDIN LATTDHLIRI
201: MFKDPEGYVP MSVVASFKKI KALTSNHAYV AKILQCSTKL VVSEDGRKVR RQFPLSEKDL EELQSRIVVA ENLPDDHCHQ NLMKIFSAVG SVRMIRTCQP
301: QLNGGASAAS RTGKSDTTLY SNKLHAFVEY ESIELAEKAV MELNDEDNWR NGLKVRILNR WTGKSGQTRG KKIGYESEVS FKEDDTSSEA SEKHSDDLWH
401: HLDAHLNDLA EEHVDGQRKG LNRSWVKGLG QGRGRPQFHQ TSRGGHLSTP PASMRRAYSV GSALSSINRF SLAGQPSMLS DQSAPVKQTS VPRMPDGTRG
501: FSMGRGKPVA IKT

Best Arabidopsis Sequence Match ( AT2G43970.1 )
(BLAST)

001: MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE

Arabidopsis Description

LARP6BLa-related protein 6B [Source:UniProtKB/Swiss-Prot;Acc:O80567]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.