Factsheet for Solyc10g050550.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083493	Potato	nucleus	73.54	73.72
Solyc01g108310.2.1	Tomato	nucleus	58.25	59.7
KRH71184	Soybean	nucleus	45.63	46.53
KRH50235	Soybean	nucleus	43.69	45.11
VIT_03s0063g01050.t01	Wine grape	nucleus	43.69	43.69
CDX99268	Canola	nucleus	44.9	41.67
Bra022387.1-P	Field mustard	nucleus	44.66	41.53
CDX92302	Canola	nucleus	44.66	41.53
CDX82312	Canola	nucleus	43.2	41.3
CDY22991	Canola	nucleus	42.48	40.6
Bra001733.1-P	Field mustard	nucleus	44.17	39.74
AT3G19090.2	Thale cress	nucleus	44.17	37.76
Os07t0102500-01	Rice	nucleus	38.84	36.53
TraesCS2A01G256900.1	Wheat	nucleus	38.35	35.03
TraesCS2B01G285700.1	Wheat	nucleus	37.86	34.98
TraesCS2D01G265900.1	Wheat	nucleus	37.86	34.9
GSMUA_Achr4P23770_001	Banana	nucleus	39.81	34.89
Os03t0566500-01	Rice	nucleus, plastid	35.68	34.27
Zm00001d032397_P001	Maize	nucleus	32.52	32.45
KXG38156	Sorghum	nucleus	36.65	32.13
Zm00001d018613_P004	Maize	nucleus	39.08	31.88
EER97821	Sorghum	nucleus	39.08	30.96
Solyc02g070550.2.1	Tomato	nucleus	27.91	30.75
Solyc12g019000.1.1	Tomato	nucleus	34.47	30.02
Solyc08g015650.2.1	Tomato	nucleus	33.01	29.82
Solyc12g096640.1.1	Tomato	nucleus, plastid	32.28	25.93

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388	UniProt:K4D0L0
InterPro:La_HTH	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF05383	PFscan:PS50102	PFscan:PS50961
PANTHER:PTHR22792	PANTHER:PTHR22792:SF62	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM00715
SUPFAM:SSF46785	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc10g050550.1	EnsemblPlants:Solyc10g050550.1.1	UniParc:UPI000276A3C8	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:-:50022706..50025737

Molecular Weight (calculated)

45959.6 Da

IEP (calculated)

9.939

GRAVY (calculated)

-0.639

Length

412 amino acids

Sequence
(BLAST)

001: MQPEKVASSV QESTQDQFFD HNGVGSFKFN VQAPAFVPRK SHATTIPISG GYLYPCNFQY VNTNNNNHNS KIYGGDQDVA SLLQEPSFVS SLSQKDKLPE
101: DLRLKVIKQV EYQLSDMSLL ANESLLKQMN KDPEAFVPIS SVSATKKIKS LITNNQLTLS HALLSSTKLI VSDDGKRVKR KIPFTDKDKE ELMLRTVVAE
201: NLPDDHSHHN IEKIFNVAGS VKTIRVCHPQ DPNTRTRGDL GISSKLHALI EFEHPEAAEK AAMKLNDERN WRKGLRVRLL LRRSPKSVLK SRKTAFEGCL
301: DDEDWMSSGL AEDSHHVSNQ SEVVDHTNVE ETLAAATTKK TWGKGRVKST RQRNQMYNGR GLLSSSPQSS KTYEAPVNQV TKGPRMPDGT RGFTMGRGKP
401: LSINIQTGVH VV

Best Arabidopsis Sequence Match ( AT3G19090.1 )
(BLAST)

001: MAQMQREEVE SVTTEKKRLD GGGGSSGAQA TAFKFNAQAP EFVPRSHTTA PAPQVSPVSG YFYPCFHYNG GCIGGCGGGV CGGGGTGVGT QSSDWIYVGG
101: GDPTAQHQHV HDPAAAFYIS NPAVQFPASQ NSSSSSKNLL SDDLRLKIVK QVEYQFTDMS LLANESISKH ISKDPEGYVP VSYIASTKKI KALTSNHHLV
201: SLALRSSSKL VVSEDGKKVK RTSQFTDRDR EELQGRTVVA ENLPDDHSYQ NLEKIFGVVG NVKAIRICHP PESNSSRPKG DFLMSNKIHA LIEYDNTVIA
301: DKAVEKLNDE RNWRKGLRVR LLLRCSPKSV LKNRRNFDGI LIDDELPSYE SGEDSPRLHL TESQLDNDGD DNNVGGLWGK GRGKGRGRSP RSYAVGGGGR
401: SFGIGLGVSL GIPSLGSHES SSPKTATKGP RMPDGTRGFT MGRGKPSISL SPNNL

Arabidopsis Description

RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLZ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.