Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d032397_P001 | Maize | nucleus | 58.04 | 60.29 |
| KXG38156 | Sorghum | nucleus | 64.57 | 58.94 |
| Os07t0102500-01 | Rice | nucleus | 51.98 | 50.91 |
| PGSC0003DMT400066353 | Potato | nucleus | 31.7 | 48.06 |
| VIT_03s0063g01050.t01 | Wine grape | nucleus | 43.12 | 44.9 |
| KRH50235 | Soybean | nucleus | 39.63 | 42.61 |
| KRH71184 | Soybean | nucleus | 40.09 | 42.57 |
| GSMUA_Achr4P23770_001 | Banana | nucleus | 46.15 | 42.13 |
| Solyc01g108310.2.1 | Tomato | nucleus | 38.69 | 41.29 |
| Bra022387.1-P | Field mustard | nucleus | 40.56 | 39.28 |
| CDX92302 | Canola | nucleus | 40.56 | 39.28 |
| CDX99268 | Canola | nucleus | 40.56 | 39.19 |
| PGSC0003DMT400083493 | Potato | nucleus | 36.6 | 38.2 |
| CDY22991 | Canola | nucleus | 38.23 | 38.05 |
| CDX82312 | Canola | nucleus | 37.76 | 37.59 |
| Bra001733.1-P | Field mustard | nucleus | 38.69 | 36.24 |
| Solyc10g050550.1.1 | Tomato | nucleus | 34.27 | 35.68 |
| AT3G19090.2 | Thale cress | nucleus | 39.86 | 35.48 |
| Os11t0248200-01 | Rice | nucleus, plasma membrane | 28.9 | 35.03 |
| Os08t0542900-01 | Rice | nucleus | 33.1 | 33.26 |
| Os12t0225100-01 | Rice | nucleus | 16.08 | 28.4 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:4333271 | ProteinID:ABF97161.1 | EMBL:AK070576 |
| ProteinID:BAF12418.1 | ProteinID:BAS84958.1 | ProteinID:EEE59367.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:1990904 | InterPro:IPR000504 |
| InterPro:IPR006630 | InterPro:IPR012677 | InterPro:IPR036388 | InterPro:La_HTH | InterPro:La_like_plant_RRM | InterPro:Lupus_La |
| InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os03g0566500 | EnsemblPlants:Os03t0566500-01 | PFAM:PF00076 | PFAM:PF05383 | PRINTS:PR00302 |
| PFscan:PS50102 | PFscan:PS50961 | PANTHER:PTHR22792 | PANTHER:PTHR22792:SF62 | UniProt:Q10I29 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SMART:SM00715 | SUPFAM:SSF46785 | SUPFAM:SSF54928 | UniParc:UPI0000DB4A69 |
| InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | RefSeq:XP_015630193.1 | SEG:seg | : | : |
Description
Lupus La protein family protein. (Os03t0566500-01)
Coordinates
chr3:-:20476624..20480558
Molecular Weight (calculated)
46196.9 Da
IEP (calculated)
10.227
GRAVY (calculated)
-0.504
Length
429 amino acids
Sequence
(BLAST)
(BLAST)
001: MPQESRGSSG KAPVTVTVTA AGASSSGECS TPPFRLNVHA PEFVPRSPAA SPMAAAAAGY YSPFLQLPGS SIGLGADWSI FADPDPTFFL PDFGHAKIGG
101: GNGQPKGASP ADIAQKIIKQ VEYQFSDTNL VANDFLMKIM NKDPECYVPM SVISSWKKIK AMGVTNQLLV NALRTSSKLV VSDDGKKVRR AQPFTERHKE
201: ELQSRMVIAE NLPEDSTRNS LEKIFGIIGS VKNIRICHPQ EPSSARSSKS DALISNKLHA LIEYETSQQA DRAVDKLNDE RNWRKGLRVR PVLRRSPKSA
301: MRLKRPDFDH LMISDDDHSP QSQASSDSPM ADHLPDHHQE DQHGKKSWGR GRGSRPHAAA GGAPQAAAAA AGHLDSLMMM SPRHAPQGPR MPDGTRGFTM
401: GRGRPSPAAV LRSSPARAVA APAPAAVMI
101: GNGQPKGASP ADIAQKIIKQ VEYQFSDTNL VANDFLMKIM NKDPECYVPM SVISSWKKIK AMGVTNQLLV NALRTSSKLV VSDDGKKVRR AQPFTERHKE
201: ELQSRMVIAE NLPEDSTRNS LEKIFGIIGS VKNIRICHPQ EPSSARSSKS DALISNKLHA LIEYETSQQA DRAVDKLNDE RNWRKGLRVR PVLRRSPKSA
301: MRLKRPDFDH LMISDDDHSP QSQASSDSPM ADHLPDHHQE DQHGKKSWGR GRGSRPHAAA GGAPQAAAAA AGHLDSLMMM SPRHAPQGPR MPDGTRGFTM
401: GRGRPSPAAV LRSSPARAVA APAPAAVMI
001: MAQMQREEVE SVTTEKKRLD GGGGSSGAQA TAFKFNAQAP EFVPRSHTTA PAPQVSPVSG YFYPCFHYNG GCIGGCGGGV CGGGGTGVGT QSSDWIYVGG
101: GDPTAQHQHV HDPAAAFYIS NPAVQFPASQ NSSSSSKNLL SDDLRLKIVK QVEYQFTDMS LLANESISKH ISKDPEGYVP VSYIASTKKI KALTSNHHLV
201: SLALRSSSKL VVSEDGKKVK RTSQFTDRDR EELQGRTVVA ENLPDDHSYQ NLEKIFGVVG NVKAIRICHP PESNSSRPKG DFLMSNKIHA LIEYDNTVIA
301: DKAVEKLNDE RNWRKGLRVR LLLRCSPKSV LKNRRNFDGI LIDDELPSYE SGEDSPRLHL TESQLDNDGD DNNVGGLWGK GRGKGRGRSP RSYAVGGGGR
401: SFGIGLGVSL GIPSLGSHES SSPKTATKGP RMPDGTRGFT MGRGKPSISL SPNNL
101: GDPTAQHQHV HDPAAAFYIS NPAVQFPASQ NSSSSSKNLL SDDLRLKIVK QVEYQFTDMS LLANESISKH ISKDPEGYVP VSYIASTKKI KALTSNHHLV
201: SLALRSSSKL VVSEDGKKVK RTSQFTDRDR EELQGRTVVA ENLPDDHSYQ NLEKIFGVVG NVKAIRICHP PESNSSRPKG DFLMSNKIHA LIEYDNTVIA
301: DKAVEKLNDE RNWRKGLRVR LLLRCSPKSV LKNRRNFDGI LIDDELPSYE SGEDSPRLHL TESQLDNDGD DNNVGGLWGK GRGKGRGRSP RSYAVGGGGR
401: SFGIGLGVSL GIPSLGSHES SSPKTATKGP RMPDGTRGFT MGRGKPSISL SPNNL
Arabidopsis Description
RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLZ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.