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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • plastid 2
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os11t0248200-01 Rice nucleus, plasma membrane 58.85 40.4
TraesCS5D01G126900.3 Wheat nucleus 62.96 32.9
TraesCS5B01G121000.2 Wheat nucleus 61.32 32.11
EES16897 Sorghum nucleus 64.61 32.11
TraesCS5A01G115200.1 Wheat nucleus 60.49 31.61
HORVU5Hr1G029110.1 Barley nucleus 58.85 30.95
VIT_05s0094g01400.t01 Wine grape mitochondrion 38.27 28.62
GSMUA_Achr3P19230_001 Banana nucleus 53.5 28.57
GSMUA_Achr6P18240_001 Banana nucleus 50.62 26.8
GSMUA_Achr2P11420_001 Banana mitochondrion 45.68 22.52
Os08t0542900-01 Rice nucleus 38.27 21.78
Zm00001d023987_P001 Maize nucleus 42.8 21.22
CDY17896 Canola nucleus 38.27 20.53
Bra004795.1-P Field mustard nucleus 39.92 19.6
KRH69036 Soybean nucleus 38.27 19.54
KRG97304 Soybean nucleus 37.04 19.23
CDX79791 Canola nucleus 39.51 19.2
Solyc08g015650.2.1 Tomato nucleus 35.8 19.08
PGSC0003DMT400064931 Potato nucleus 34.57 18.06
Solyc12g019000.1.1 Tomato nucleus 33.74 17.34
AT2G43970.1 Thale cress nucleus 37.45 16.7
Os03t0566500-01 Rice nucleus, plastid 28.4 16.08
PGSC0003DMT400075259 Potato nucleus 33.74 15.83
Solyc12g096640.1.1 Tomato nucleus, plastid 32.1 15.2
Os07t0102500-01 Rice nucleus 27.16 15.07
VIT_09s0002g07980.t01 Wine grape cytosol 4.12 14.71
Protein Annotations
MapMan:35.1ProteinID:BAH95577.1ProteinID:BAT16392.1ProteinID:BAT16393.1UniProt:C7JA61GO:GO:0003674
GO:GO:0003676GO:GO:0003723GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0006139GO:GO:0006396GO:GO:0008150GO:GO:0008152GO:GO:0009987
EnsemblPlantsGene:Os12g0225100EnsemblPlants:Os12t0225100-01PANTHER:PTHR22792PANTHER:PTHR22792:SF81InterPro:RBD_domain_sfSUPFAM:SSF54928
UniParc:UPI0001B65D4CSEG:seg::::
Description
Nucleotide-binding, alpha-beta plait domain containing protein. (Os12t0225100-01);Similar to RNA binding protein. (Os12t0225100-02)
Coordinates
chr12:-:6799622..6802817
Molecular Weight (calculated)
26861.0 Da
IEP (calculated)
9.477
GRAVY (calculated)
-1.278
Length
243 amino acids
Sequence
(BLAST)
001: SVKTIRTCYP QSSNGNSPAT NRSAKLDMLF ANKLHAFVEY ETLEDAEKAI LELNDEKNWR NGLRVRLLNT CMTKGAGKGK KGVHEADGNG EEDVSTSNQS
101: NEKQLEEPSQ LSDMLPDHLF DDSSNDKEGP RRGRGRGRGG RGRGRGYHQH NNNHFNNQNY HNGQHHNHHA NNHHHQGGNR GGAHHVGTPP NQQQTKPEQH
201: PQLPIGATKQ PPGPRMPDGT RGFTLGRGKP QPFLPVLCAA VEP
Best Arabidopsis Sequence Match ( AT2G43970.1 )
(BLAST)
001: MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE
Arabidopsis Description
LARP6BLa-related protein 6B [Source:UniProtKB/Swiss-Prot;Acc:O80567]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.