Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Os04t0504800-01 | |
Os08t0314800-02 | |
Os09t0115400-01 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT2G43970.1 | Os04t0504800-01 | AT1G49760.1 | 21798944 |
AT2G43970.1 | Os08t0314800-02 | AT1G49760.1 | 21798944 |
AT2G43970.1 | Os09t0115400-01 | AT1G49760.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Os11t0248200-01 | Rice | nucleus, plasma membrane | 58.85 | 40.4 |
TraesCS5D01G126900.3 | Wheat | nucleus | 62.96 | 32.9 |
TraesCS5B01G121000.2 | Wheat | nucleus | 61.32 | 32.11 |
EES16897 | Sorghum | nucleus | 64.61 | 32.11 |
TraesCS5A01G115200.1 | Wheat | nucleus | 60.49 | 31.61 |
HORVU5Hr1G029110.1 | Barley | nucleus | 58.85 | 30.95 |
VIT_05s0094g01400.t01 | Wine grape | mitochondrion | 38.27 | 28.62 |
GSMUA_Achr3P19230_001 | Banana | nucleus | 53.5 | 28.57 |
GSMUA_Achr6P18240_001 | Banana | nucleus | 50.62 | 26.8 |
GSMUA_Achr2P11420_001 | Banana | mitochondrion | 45.68 | 22.52 |
Os08t0542900-01 | Rice | nucleus | 38.27 | 21.78 |
Zm00001d023987_P001 | Maize | nucleus | 42.8 | 21.22 |
CDY17896 | Canola | nucleus | 38.27 | 20.53 |
Bra004795.1-P | Field mustard | nucleus | 39.92 | 19.6 |
KRH69036 | Soybean | nucleus | 38.27 | 19.54 |
KRG97304 | Soybean | nucleus | 37.04 | 19.23 |
CDX79791 | Canola | nucleus | 39.51 | 19.2 |
Solyc08g015650.2.1 | Tomato | nucleus | 35.8 | 19.08 |
PGSC0003DMT400064931 | Potato | nucleus | 34.57 | 18.06 |
Solyc12g019000.1.1 | Tomato | nucleus | 33.74 | 17.34 |
AT2G43970.1 | Thale cress | nucleus | 37.45 | 16.7 |
Os03t0566500-01 | Rice | nucleus, plastid | 28.4 | 16.08 |
PGSC0003DMT400075259 | Potato | nucleus | 33.74 | 15.83 |
Solyc12g096640.1.1 | Tomato | nucleus, plastid | 32.1 | 15.2 |
Os07t0102500-01 | Rice | nucleus | 27.16 | 15.07 |
VIT_09s0002g07980.t01 | Wine grape | cytosol | 4.12 | 14.71 |
Protein Annotations
MapMan:35.1 | ProteinID:BAH95577.1 | ProteinID:BAT16392.1 | ProteinID:BAT16393.1 | UniProt:C7JA61 | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
EnsemblPlantsGene:Os12g0225100 | EnsemblPlants:Os12t0225100-01 | PANTHER:PTHR22792 | PANTHER:PTHR22792:SF81 | InterPro:RBD_domain_sf | SUPFAM:SSF54928 |
UniParc:UPI0001B65D4C | SEG:seg | : | : | : | : |
Description
Nucleotide-binding, alpha-beta plait domain containing protein. (Os12t0225100-01);Similar to RNA binding protein. (Os12t0225100-02)
Coordinates
chr12:-:6799622..6802817
Molecular Weight (calculated)
26861.0 Da
IEP (calculated)
9.477
GRAVY (calculated)
-1.278
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: SVKTIRTCYP QSSNGNSPAT NRSAKLDMLF ANKLHAFVEY ETLEDAEKAI LELNDEKNWR NGLRVRLLNT CMTKGAGKGK KGVHEADGNG EEDVSTSNQS
101: NEKQLEEPSQ LSDMLPDHLF DDSSNDKEGP RRGRGRGRGG RGRGRGYHQH NNNHFNNQNY HNGQHHNHHA NNHHHQGGNR GGAHHVGTPP NQQQTKPEQH
201: PQLPIGATKQ PPGPRMPDGT RGFTLGRGKP QPFLPVLCAA VEP
101: NEKQLEEPSQ LSDMLPDHLF DDSSNDKEGP RRGRGRGRGG RGRGRGYHQH NNNHFNNQNY HNGQHHNHHA NNHHHQGGNR GGAHHVGTPP NQQQTKPEQH
201: PQLPIGATKQ PPGPRMPDGT RGFTLGRGKP QPFLPVLCAA VEP
001: MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE
Arabidopsis Description
LARP6BLa-related protein 6B [Source:UniProtKB/Swiss-Prot;Acc:O80567]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.