Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 2
- plastid 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
23303719
plasma membrane: 27800704 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os08t0542900-01 | |
| Os11t0248200-01 | |
| Os12t0225100-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34110.1 | Os08t0542900-01 | AT2G43970.1 | 21798944 |
| AT4G34110.1 | Os11t0248200-01 | AT2G43970.1 | 21798944 |
| AT4G34110.1 | Os12t0225100-01 | AT2G43970.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G087390.3 | Barley | cytosol, mitochondrion, nucleus | 80.42 | 86.74 |
| Zm00001d003106_P003 | Maize | extracellular, mitochondrion, plasma membrane | 84.83 | 85.74 |
| Zm00001d025801_P005 | Maize | cytosol, plastid | 83.92 | 84.82 |
| TraesCS2B01G378400.1 | Wheat | nucleus | 84.37 | 83.61 |
| EES12460 | Sorghum | plastid | 84.22 | 83.58 |
| TraesCS2D01G358000.1 | Wheat | cytosol | 84.07 | 83.43 |
| TraesCS2A01G359000.1 | Wheat | cytosol | 83.92 | 83.16 |
| VIT_18s0001g10170.t01 | Wine grape | cytosol | 72.69 | 74.84 |
| GSMUA_Achr9P00990_001 | Banana | cytosol | 70.71 | 71.58 |
| GSMUA_Achr4P09890_001 | Banana | cytosol | 70.41 | 71.17 |
| KRH70673 | Soybean | nucleus | 69.65 | 70.83 |
| GSMUA_AchrUn_... | Banana | cytosol | 69.95 | 70.71 |
| KRH50336 | Soybean | cytosol | 69.65 | 70.51 |
| KRH15385 | Soybean | nucleus | 69.65 | 70.4 |
| VIT_07s0031g00210.t01 | Wine grape | cytosol | 69.2 | 69.72 |
| KRH05656 | Soybean | endoplasmic reticulum, nucleus | 68.89 | 69.42 |
| CDY62723 | Canola | cytosol | 62.22 | 66.45 |
| Bra034603.1-P | Field mustard | cytosol, plastid | 62.37 | 66.4 |
| CDY51957 | Canola | cytosol, plastid | 62.22 | 66.24 |
| Os09t0115400-01 | Rice | nucleus | 66.16 | 65.86 |
| CDX89664 | Canola | cytosol | 61.3 | 65.8 |
| Bra011488.1-P | Field mustard | cytosol, plastid | 61.0 | 65.58 |
| KRH52023 | Soybean | cytosol, endoplasmic reticulum | 62.52 | 65.4 |
| Os08t0314800-02 | Rice | cytosol, nucleus, plasma membrane | 65.4 | 65.3 |
| CDX69025 | Canola | nucleus, plastid | 60.55 | 65.3 |
| CDX71223 | Canola | cytosol | 63.13 | 65.2 |
| AT4G34110.1 | Thale cress | cytosol | 62.22 | 65.18 |
| CDX75397 | Canola | nucleus, plastid | 60.85 | 65.1 |
| CDY51045 | Canola | cytosol | 64.49 | 65.08 |
| Bra018797.1-P | Field mustard | cytosol | 64.49 | 65.08 |
| Bra013104.1-P | Field mustard | cytosol | 60.7 | 64.94 |
| CDY54068 | Canola | cytosol | 64.34 | 64.93 |
| KRH61326 | Soybean | cytosol, endoplasmic reticulum | 61.91 | 64.76 |
| CDY67364 | Canola | nucleus | 28.53 | 64.16 |
| AT1G49760.1 | Thale cress | cytosol | 64.49 | 63.34 |
| CDY36634 | Canola | nucleus | 61.3 | 62.25 |
| Bra015220.1-P | Field mustard | cytosol | 54.48 | 62.11 |
| CDY67365 | Canola | plastid | 27.47 | 61.99 |
| CDX79296 | Canola | plastid | 16.84 | 60.66 |
| VIT_03s0063g00070.t01 | Wine grape | cytosol, plastid | 69.2 | 57.94 |
| PGSC0003DMT400012508 | Potato | nucleus | 10.62 | 56.45 |
| GSMUA_Achr8P24250_001 | Banana | cytosol, plastid | 54.78 | 55.71 |
| Bra022413.1-P | Field mustard | cytosol | 30.35 | 44.84 |
| Os06t0589700-01 | Rice | cytosol, extracellular | 25.64 | 42.36 |
| CDX92325 | Canola | nucleus | 20.49 | 41.93 |
| Os03t0278500-01 | Rice | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 36.57 | 37.25 |
| CDX91689 | Canola | nucleus | 15.48 | 33.44 |
| Os10t0457000-01 | Rice | nucleus | 16.69 | 30.99 |
| Os02t0567900-01 | Rice | cytosol, nucleus | 10.02 | 25.48 |
| Os03t0569900-01 | Rice | nucleus | 15.02 | 24.63 |
| Os04t0625800-01 | Rice | nucleus | 15.33 | 23.76 |
| Os04t0449900-01 | Rice | plastid | 13.05 | 22.22 |
| Os08t0190200-00 | Rice | nucleus | 14.87 | 22.17 |
| Os03t0174100-02 | Rice | nucleus | 13.96 | 22.12 |
| Os07t0615400-01 | Rice | nucleus | 14.26 | 22.01 |
| Os08t0520300-01 | Rice | nucleus | 14.87 | 21.92 |
| Os11t0620100-01 | Rice | nucleus | 14.11 | 21.09 |
| Os09t0462700-01 | Rice | mitochondrion, nucleus, plastid | 13.96 | 20.86 |
| Os07t0516900-01 | Rice | plastid | 7.59 | 19.92 |
| Solyc06g062680.1.1 | Tomato | cytosol | 15.93 | 19.77 |
| Os04t0682400-01 | Rice | nucleus | 15.02 | 9.82 |
Protein Annotations
| Gene3D:1.10.1900.10 | MapMan:17.4.2.5 | Gene3D:3.30.70.330 | EntrezGene:4336331 | EMBL:AK067210 | ProteinID:BAF15162.1 |
| ProteinID:BAS89966.1 | ProteinID:CAE05558.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | InterPro:IPR000504 | InterPro:IPR002004 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os04g0504800 | EnsemblPlants:Os04t0504800-01 | InterPro:PABP-dom | InterPro:PABP_1234 |
| InterPro:PABP_HYD | PFAM:PF00076 | PFAM:PF00658 | PFscan:PS50102 | PFscan:PS51309 | PANTHER:PTHR24012 |
| PANTHER:PTHR24012:SF678 | UniProt:Q7F8Y1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00360 |
| SMART:SM00361 | SMART:SM00517 | SUPFAM:SSF54928 | SUPFAM:SSF63570 | TIGRFAMs:TIGR01628 | UniParc:UPI00001B1600 |
| RefSeq:XP_015635554.1 | SEG:seg | : | : | : | : |
Description
OsPABPC3, PABPC3Similar to Poly(A)-binding protein. (Os04t0504800-01);Similar to polyadenylate-binding protein 2. (Os04t0504800-02);Similar to polyadenylate-binding protein 2. (Os04t0504800-03)
Coordinates
chr4:-:25194829..25201219
Molecular Weight (calculated)
71235.4 Da
IEP (calculated)
9.190
GRAVY (calculated)
-0.314
Length
659 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAQMAAVAV NGGSPGAVTA AAAAGGVGVA VGLGGGGAQS LYVGDLEASV TDSQLYELFS QAGQVMSVRV CRDISSRRSL GYAYVNFNNP VDAARALELL
101: NFAPLNGKPI RVMYSNRDPS SRRSGSANIF IKNLDKAIDH KTLHDTFSAF GNILSCKVAT DEMGQSKGFG FVQYDKGEAA QSAIKSLNGM LINDKPVYVG
201: PFLRKQEREN SVDKTKFNNV FVKNLSESTT KEDLVKIFGA YGNITSAVIM VGMDGKSRCF GFINFKSPDD AARAVEELNG KKINDKEWYV GRAQKKSERE
301: IELKRRFEQS MKDAADKYQG LNLYMKNLDD SIGDDQLCEL FSNYGKITSC KIMRDANGVS KGSGFVAFST REEASQALTE MNGKMISGKP LYVAFAQRKE
401: DRKAMLQAQF SQVRPVPMTP SMAPRLPMYP PMAPLGQQLF YGQAPPAIMP PQPGFGFQQQ LVPGMRPGGA HMPNYFVPVV QQGQQGPRPG IRRSGAGSAQ
501: GQQSAQPFQQ QMLPRGRVYR YPPAHNMPDV PPMPGVAGGM IQSYDMGGFP VRDAGLSPAP IGTLTSALAN ANPEQQRTIL GESLYPLVEL LEQNHAAKVT
601: GMLLEMDQTE VLHLLESPEA LKSKVAEAMD VLRNVAQQHN ANTPTSQLAA LSLGDAIIS
101: NFAPLNGKPI RVMYSNRDPS SRRSGSANIF IKNLDKAIDH KTLHDTFSAF GNILSCKVAT DEMGQSKGFG FVQYDKGEAA QSAIKSLNGM LINDKPVYVG
201: PFLRKQEREN SVDKTKFNNV FVKNLSESTT KEDLVKIFGA YGNITSAVIM VGMDGKSRCF GFINFKSPDD AARAVEELNG KKINDKEWYV GRAQKKSERE
301: IELKRRFEQS MKDAADKYQG LNLYMKNLDD SIGDDQLCEL FSNYGKITSC KIMRDANGVS KGSGFVAFST REEASQALTE MNGKMISGKP LYVAFAQRKE
401: DRKAMLQAQF SQVRPVPMTP SMAPRLPMYP PMAPLGQQLF YGQAPPAIMP PQPGFGFQQQ LVPGMRPGGA HMPNYFVPVV QQGQQGPRPG IRRSGAGSAQ
501: GQQSAQPFQQ QMLPRGRVYR YPPAHNMPDV PPMPGVAGGM IQSYDMGGFP VRDAGLSPAP IGTLTSALAN ANPEQQRTIL GESLYPLVEL LEQNHAAKVT
601: GMLLEMDQTE VLHLLESPEA LKSKVAEAMD VLRNVAQQHN ANTPTSQLAA LSLGDAIIS
001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
Arabidopsis Description
PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.