Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015220.1-P | Field mustard | cytosol | 86.52 | 95.5 |
| CDY36634 | Canola | nucleus | 95.61 | 93.99 |
| CDY67364 | Canola | nucleus | 40.6 | 88.4 |
| CDX89664 | Canola | cytosol | 84.01 | 87.3 |
| CDX79295 | Canola | cytosol, plastid | 13.64 | 87.0 |
| CDY67365 | Canola | plastid | 37.93 | 82.88 |
| CDY08990 | Canola | cytosol | 12.85 | 82.83 |
| CDX69025 | Canola | nucleus, plastid | 79.0 | 82.49 |
| CDX75397 | Canola | nucleus, plastid | 79.47 | 82.31 |
| CDY62723 | Canola | cytosol | 79.31 | 82.01 |
| CDY51957 | Canola | cytosol, plastid | 79.31 | 81.74 |
| CDY37229 | Canola | cytosol | 25.08 | 75.12 |
| KRH50336 | Soybean | cytosol | 75.39 | 73.89 |
| KRH70673 | Soybean | nucleus | 74.92 | 73.77 |
| CDX79296 | Canola | plastid | 21.0 | 73.22 |
| CDY54068 | Canola | cytosol | 74.61 | 72.89 |
| CDY51045 | Canola | cytosol | 74.45 | 72.74 |
| PGSC0003DMT400066245 | Potato | extracellular | 72.1 | 71.54 |
| Solyc01g107870.2.1 | Tomato | extracellular | 71.79 | 71.23 |
| HORVU2Hr1G087390.3 | Barley | cytosol, mitochondrion, nucleus | 62.07 | 64.81 |
| GSMUA_Achr4P09890_001 | Banana | cytosol | 65.67 | 64.26 |
| GSMUA_Achr9P00990_001 | Banana | cytosol | 65.52 | 64.21 |
| Zm00001d003106_P003 | Maize | extracellular, mitochondrion, plasma membrane | 65.2 | 63.8 |
| Os09t0115400-01 | Rice | nucleus | 66.14 | 63.75 |
| KXG35258 | Sorghum | cytosol | 65.52 | 63.72 |
| TraesCS5B01G159400.1 | Wheat | cytosol | 64.89 | 63.59 |
| GSMUA_AchrUn_... | Banana | cytosol | 64.89 | 63.5 |
| TraesCS5A01G161800.2 | Wheat | nucleus | 64.73 | 63.44 |
| TraesCS5D01G167000.1 | Wheat | nucleus, unclear | 64.73 | 63.44 |
| Os04t0504800-01 | Rice | plasma membrane | 65.2 | 63.13 |
| Zm00001d019824_P004 | Maize | cytosol | 64.89 | 63.11 |
| TraesCS7D01G287900.1 | Wheat | cytosol | 63.01 | 63.01 |
| TraesCS2D01G358000.1 | Wheat | cytosol | 65.52 | 62.95 |
| Zm00001d025801_P005 | Maize | cytosol, plastid | 64.26 | 62.88 |
| Os08t0314800-02 | Rice | cytosol, nucleus, plasma membrane | 65.05 | 62.88 |
| TraesCS2A01G359000.1 | Wheat | cytosol | 65.52 | 62.86 |
| TraesCS2B01G378400.1 | Wheat | nucleus | 65.36 | 62.71 |
| Zm00001d005276_P007 | Maize | cytosol | 64.11 | 62.54 |
| EES12460 | Sorghum | plastid | 64.89 | 62.35 |
| GSMUA_Achr4P20270_001 | Banana | cytosol | 62.54 | 62.05 |
| TraesCS7A01G288700.1 | Wheat | nucleus | 63.79 | 61.48 |
| CDX89562 | Canola | nucleus | 61.44 | 60.78 |
| CDY38939 | Canola | nucleus | 60.66 | 60.09 |
| CDY46079 | Canola | nucleus | 58.62 | 59.46 |
| HORVU5Hr1G050560.1 | Barley | plastid | 64.89 | 58.97 |
| CDY67921 | Canola | nucleus | 59.4 | 58.76 |
| VIT_03s0063g00070.t01 | Wine grape | cytosol, plastid | 71.16 | 57.69 |
| HORVU7Hr1G063970.1 | Barley | cytosol, nucleus, plastid | 63.32 | 56.42 |
| TraesCS7B01G182800.3 | Wheat | cytosol | 59.4 | 56.15 |
| GSMUA_Achr8P24250_001 | Banana | cytosol, plastid | 52.04 | 51.23 |
| CDY72408 | Canola | plastid | 7.21 | 49.46 |
| CDY41472 | Canola | cytosol, plastid | 48.28 | 48.05 |
| CDY37935 | Canola | nucleus | 48.9 | 47.93 |
| CDY03685 | Canola | nucleus | 47.65 | 47.28 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 47.49 | 46.76 |
| GSMUA_Achr7P05430_001 | Banana | nucleus | 65.67 | 46.35 |
| CDX96344 | Canola | plastid | 49.22 | 45.91 |
| CDY36684 | Canola | plastid | 47.81 | 45.86 |
| CDX72826 | Canola | plastid | 49.06 | 45.76 |
| CDX92325 | Canola | nucleus | 22.88 | 45.34 |
| CDY57754 | Canola | nucleus | 13.48 | 40.38 |
| CDY33264 | Canola | mitochondrion, nucleus | 12.54 | 40.0 |
| CDY30168 | Canola | cytosol | 30.09 | 35.69 |
| CDY56198 | Canola | cytosol | 26.96 | 35.17 |
| CDX91689 | Canola | nucleus | 15.67 | 32.79 |
| CDY59539 | Canola | nucleus | 15.05 | 26.23 |
| CDY66740 | Canola | nucleus | 15.52 | 25.98 |
| CDY67617 | Canola | nucleus | 15.52 | 25.98 |
| CDY43894 | Canola | nucleus | 14.73 | 25.82 |
| CDY13992 | Canola | nucleus | 16.93 | 25.78 |
| CDY06734 | Canola | mitochondrion | 12.23 | 25.57 |
| CDX92537 | Canola | nucleus | 16.61 | 25.3 |
| CDY34835 | Canola | nucleus | 15.05 | 24.43 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 16.3 | 24.19 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 16.3 | 24.19 |
| CDY17286 | Canola | nucleus | 15.05 | 23.7 |
| CDY19874 | Canola | nucleus | 15.2 | 23.15 |
| CDX89287 | Canola | nucleus | 14.89 | 22.95 |
| CDY51403 | Canola | nucleus | 15.05 | 22.86 |
| CDY33092 | Canola | nucleus | 15.2 | 22.82 |
| CDY61476 | Canola | nucleus | 14.89 | 22.67 |
| CDY02486 | Canola | nucleus | 14.89 | 22.62 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 14.89 | 22.3 |
| CDY63384 | Canola | mitochondrion, nucleus | 14.58 | 22.25 |
| CDY29263 | Canola | nucleus | 14.58 | 22.2 |
| CDY46671 | Canola | nucleus | 14.89 | 22.14 |
| CDY14290 | Canola | nucleus | 14.42 | 22.06 |
| CDX95176 | Canola | nucleus | 14.42 | 21.96 |
| CDY16528 | Canola | nucleus | 14.58 | 21.93 |
| CDY32840 | Canola | nucleus | 14.42 | 21.85 |
| CDY22988 | Canola | nucleus | 14.26 | 21.67 |
| CDY18570 | Canola | nucleus | 14.73 | 21.66 |
| CDY50959 | Canola | nucleus | 14.58 | 21.63 |
| CDX92304 | Canola | nucleus | 14.26 | 21.46 |
| CDX99265 | Canola | nucleus | 14.26 | 21.46 |
| CDY68866 | Canola | nucleus | 13.95 | 21.45 |
| CDY28101 | Canola | nucleus | 14.42 | 21.45 |
| CDX95462 | Canola | nucleus | 14.58 | 21.43 |
| CDY66423 | Canola | nucleus | 14.26 | 21.36 |
| CDX82310 | Canola | nucleus | 13.79 | 21.36 |
| CDY29341 | Canola | nucleus | 13.95 | 21.24 |
| CDY52067 | Canola | nucleus | 13.95 | 21.24 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 15.36 | 19.33 |
| CDX81822 | Canola | mitochondrion, nucleus | 14.89 | 17.43 |
Protein Annotations
| Gene3D:1.10.1900.10 | MapMan:17.4.2.5 | Gene3D:3.30.70.330 | GO:A0A078C870 | EnsemblPlants:CDX71223 | ProteinID:CDX71223 |
| ProteinID:CDX71223.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00144804001 |
| InterPro:Hud_Sxl_RNA | InterPro:IPR000504 | InterPro:IPR002004 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:PABP-dom |
| InterPro:PABP_1234 | InterPro:PABP_HYD | PFAM:PF00076 | PFAM:PF00658 | PRINTS:PR00961 | PFscan:PS50102 |
| PFscan:PS51309 | PANTHER:PTHR24012 | PANTHER:PTHR24012:SF349 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk |
| SMART:SM00360 | SMART:SM00361 | SMART:SM00517 | SUPFAM:SSF54928 | SUPFAM:SSF63570 | TIGRFAMs:TIGR01628 |
| UniParc:UPI0004EEEDCA | SEG:seg | : | : | : | : |
Description
BnaC07g05020D
Coordinates
chrLK031792:+:1425615..1429310
Molecular Weight (calculated)
69839.0 Da
IEP (calculated)
8.100
GRAVY (calculated)
-0.527
Length
638 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQVQPQGQN PNGSGTAGGT TSLYVGDLHA NVTDAQLFEA FSQMGQVVTV RVCRDLATRR SLGYGYVNFA TPQDAARAIQ EMNYIPLNGK PVRVMYSHRD
101: PSVRRSGAGN IFIKNLDKSI DHKALHDTFS AFGNIISCKV AVDSSGQSKG YGFVQYETEE SAQKAMAQLN GMLLNDKQVY VGPFLRRQER DSTANVTKFT
201: NVYVKNLAES TTDDDLKNTF GEFGNITSAV VMKDGDGKSK GFGFVNFDNA DDAAKAVEAL NGKTFNDKEW FVGRAQKKSE RETELKVRYE QSLREAADKF
301: QSSNLYVKNL DDSISDEKLK ELFTPYGTVT SCKVMRDPNG ISRGSGFVAF STPEEASKAM SEMSGKMIEN KPLYVAVAQR KEDRRAILQA QFSQMRPGAM
401: PPSVGPRMQI YSPGGPGIGQ QVFYGQAPPP MIPPQSGFGY QQQMVPGMRP GGGPMHNFFM PMVQHGQQRP GGRRPGGIQH SHHHQQQQVP IMQQQQQQHP
501: RGRMFRYSQG RGSGGPPDVP GMLPYEMPSN MPLRDPVLSQ HVPIGALATS LANASPEHQR TMLGENLYPL VEQLEAESAA KVTGMLLEMD QTEVLHLLES
601: PEALKAKVAE AMDVLRSVAA GGAAEQLASL NLNDNLVS
101: PSVRRSGAGN IFIKNLDKSI DHKALHDTFS AFGNIISCKV AVDSSGQSKG YGFVQYETEE SAQKAMAQLN GMLLNDKQVY VGPFLRRQER DSTANVTKFT
201: NVYVKNLAES TTDDDLKNTF GEFGNITSAV VMKDGDGKSK GFGFVNFDNA DDAAKAVEAL NGKTFNDKEW FVGRAQKKSE RETELKVRYE QSLREAADKF
301: QSSNLYVKNL DDSISDEKLK ELFTPYGTVT SCKVMRDPNG ISRGSGFVAF STPEEASKAM SEMSGKMIEN KPLYVAVAQR KEDRRAILQA QFSQMRPGAM
401: PPSVGPRMQI YSPGGPGIGQ QVFYGQAPPP MIPPQSGFGY QQQMVPGMRP GGGPMHNFFM PMVQHGQQRP GGRRPGGIQH SHHHQQQQVP IMQQQQQQHP
501: RGRMFRYSQG RGSGGPPDVP GMLPYEMPSN MPLRDPVLSQ HVPIGALATS LANASPEHQR TMLGENLYPL VEQLEAESAA KVTGMLLEMD QTEVLHLLES
601: PEALKAKVAE AMDVLRSVAA GGAAEQLASL NLNDNLVS
001: MAQVQLQGQT PNGSTAAVTS APATSGGATA TQFGNTSLYV GDLDFNVTDS QLFDAFGQMG TVVTVRVCRD LVTRRSLGYG YVNFTNPQDA ARAIQELNYI
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS
Arabidopsis Description
PAB2Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A178UWB3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.