Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040663.1-P | Field mustard | nucleus | 87.35 | 98.39 |
| CDY68866 | Canola | nucleus | 94.27 | 95.18 |
| CDY28101 | Canola | nucleus | 89.74 | 87.65 |
| CDY50959 | Canola | nucleus | 89.5 | 87.21 |
| CDY32840 | Canola | nucleus | 87.11 | 86.7 |
| CDY16528 | Canola | nucleus | 87.59 | 86.56 |
| CDY22988 | Canola | nucleus | 75.42 | 75.24 |
| CDX82310 | Canola | nucleus | 72.79 | 74.03 |
| AT1G49600.3 | Thale cress | nucleus | 79.47 | 74.0 |
| CDY18570 | Canola | nucleus | 75.66 | 73.04 |
| CDX92304 | Canola | nucleus | 73.75 | 72.88 |
| CDX99265 | Canola | nucleus | 73.75 | 72.88 |
| CDX95462 | Canola | nucleus | 75.42 | 72.81 |
| VIT_03s0063g00850.t01 | Wine grape | nucleus | 63.25 | 64.01 |
| Solyc01g108500.2.1 | Tomato | nucleus | 62.29 | 63.2 |
| GSMUA_Achr9P15210_001 | Banana | nucleus | 46.06 | 61.86 |
| GSMUA_Achr3P06840_001 | Banana | nucleus | 45.82 | 61.54 |
| PGSC0003DMT400066648 | Potato | nucleus | 61.58 | 61.43 |
| KRH50251 | Soybean | nucleus | 61.81 | 60.09 |
| KRH71168 | Soybean | nucleus | 61.58 | 59.86 |
| GSMUA_Achr10P... | Banana | nucleus | 44.63 | 59.55 |
| Solyc10g050860.1.1 | Tomato | nucleus | 60.38 | 59.11 |
| GSMUA_Achr6P10190_001 | Banana | nucleus | 43.68 | 58.47 |
| TraesCS5B01G241400.1 | Wheat | nucleus | 47.26 | 57.89 |
| TraesCS5A01G243500.1 | Wheat | nucleus | 47.02 | 57.6 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 47.02 | 57.6 |
| Os02t0567900-01 | Rice | cytosol, nucleus | 34.13 | 55.21 |
| CDY06734 | Canola | mitochondrion | 38.42 | 52.79 |
| CDY52067 | Canola | nucleus | 52.51 | 52.51 |
| CDX95176 | Canola | nucleus | 52.27 | 52.27 |
| GSMUA_Achr3P01720_001 | Banana | mitochondrion | 48.21 | 50.12 |
| Os04t0449900-01 | Rice | plastid | 46.06 | 49.87 |
| GSMUA_Achr6P09470_001 | Banana | nucleus | 17.42 | 49.66 |
| TraesCS6A01G204400.1 | Wheat | mitochondrion | 44.87 | 49.6 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 49.4 | 48.82 |
| HORVU5Hr1G069180.3 | Barley | nucleus, peroxisome, plastid | 50.12 | 48.5 |
| KXG35789 | Sorghum | nucleus | 50.36 | 48.17 |
| Zm00001d020748_P002 | Maize | plasma membrane | 49.4 | 47.81 |
| CDY34835 | Canola | nucleus | 44.63 | 47.58 |
| HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 46.54 | 46.76 |
| CDX89287 | Canola | nucleus | 46.06 | 46.62 |
| TraesCS2A01G317700.2 | Wheat | plastid | 47.02 | 46.46 |
| TraesCS2D01G315400.2 | Wheat | plastid | 47.02 | 46.46 |
| TraesCS2B01G335700.1 | Wheat | plastid | 46.54 | 46.43 |
| EES10898 | Sorghum | nucleus | 46.78 | 46.34 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 45.58 | 45.8 |
| CDY14290 | Canola | nucleus | 45.35 | 45.56 |
| CDY46671 | Canola | nucleus | 46.3 | 45.22 |
| CDY17286 | Canola | nucleus | 43.68 | 45.19 |
| CDY29263 | Canola | nucleus | 45.11 | 45.11 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 45.82 | 45.07 |
| CDY66423 | Canola | nucleus | 45.82 | 45.07 |
| Os09t0462700-01 | Rice | mitochondrion, nucleus, plastid | 47.02 | 44.67 |
| EES05289 | Sorghum | plastid | 46.06 | 44.37 |
| Zm00001d050838_P001 | Maize | plastid | 44.87 | 43.72 |
| CDY19874 | Canola | nucleus | 43.44 | 43.44 |
| HORVU2Hr1G078910.4 | Barley | mitochondrion, nucleus | 44.15 | 43.33 |
| TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 46.06 | 42.32 |
| Zm00001d025551_P002 | Maize | plastid | 44.87 | 41.59 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 46.3 | 40.93 |
| CDY13992 | Canola | nucleus | 40.1 | 40.1 |
| CDX92537 | Canola | nucleus | 39.62 | 39.62 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 40.1 | 39.07 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 40.1 | 39.07 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 45.11 | 37.28 |
| CDY63384 | Canola | mitochondrion, nucleus | 25.54 | 25.6 |
| CDY51403 | Canola | nucleus | 25.06 | 25.0 |
| CDY33092 | Canola | nucleus | 25.3 | 24.94 |
| CDY61476 | Canola | nucleus | 24.82 | 24.82 |
| CDY02486 | Canola | nucleus | 24.82 | 24.76 |
| CDY67365 | Canola | plastid | 14.8 | 21.23 |
| CDX81822 | Canola | mitochondrion, nucleus | 25.54 | 19.63 |
| CDY72408 | Canola | plastid | 3.58 | 16.13 |
| CDX69025 | Canola | nucleus, plastid | 22.2 | 15.22 |
| CDY59539 | Canola | nucleus | 13.13 | 15.03 |
| CDY57754 | Canola | nucleus | 7.64 | 15.02 |
| CDX75397 | Canola | nucleus, plastid | 21.96 | 14.94 |
| CDY51957 | Canola | cytosol, plastid | 21.96 | 14.86 |
| CDY62723 | Canola | cytosol | 21.72 | 14.75 |
| CDY66740 | Canola | nucleus | 13.37 | 14.7 |
| CDY67617 | Canola | nucleus | 13.37 | 14.7 |
| CDY43894 | Canola | nucleus | 12.65 | 14.56 |
| CDY38939 | Canola | nucleus | 21.72 | 14.13 |
| CDX89562 | Canola | nucleus | 21.72 | 14.11 |
| CDX89664 | Canola | cytosol | 20.53 | 14.01 |
| CDX71223 | Canola | cytosol | 21.24 | 13.95 |
| CDY56198 | Canola | cytosol | 15.99 | 13.7 |
| CDY46079 | Canola | nucleus | 20.05 | 13.35 |
| CDY54068 | Canola | cytosol | 20.76 | 13.32 |
| CDY51045 | Canola | cytosol | 20.53 | 13.17 |
| CDX79296 | Canola | plastid | 5.73 | 13.11 |
| CDY41472 | Canola | cytosol, plastid | 20.05 | 13.1 |
| CDY03685 | Canola | nucleus | 19.81 | 12.91 |
| CDY67921 | Canola | nucleus | 19.81 | 12.87 |
| CDX72826 | Canola | plastid | 21.0 | 12.87 |
| CDX96344 | Canola | plastid | 21.0 | 12.87 |
| CDY30168 | Canola | cytosol | 16.47 | 12.83 |
| CDY36634 | Canola | nucleus | 19.81 | 12.79 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 19.57 | 12.65 |
| CDY37935 | Canola | nucleus | 19.57 | 12.6 |
| CDY33264 | Canola | mitochondrion, nucleus | 5.97 | 12.5 |
| CDY36684 | Canola | plastid | 19.81 | 12.48 |
| CDX92325 | Canola | nucleus | 6.21 | 8.07 |
| CDY67364 | Canola | nucleus | 4.77 | 6.83 |
| CDX91689 | Canola | nucleus | 2.86 | 3.93 |
| CDY37229 | Canola | cytosol | 1.67 | 3.29 |
| CDX79295 | Canola | cytosol, plastid | 0.0 | 0.0 |
| CDY08990 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | GO:A0A078GUY2 | UniProt:A0A078GUY2 | EnsemblPlants:CDY29341 | ProteinID:CDY29341 |
| ProteinID:CDY29341.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00042906001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43955 |
| PANTHER:PTHR43955:SF6 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE6719 |
| SEG:seg | : | : | : | : | : |
Description
BnaA05g16080DBnaA05g16080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GUY2]
Coordinates
chrLK032235:+:317722..320423
Molecular Weight (calculated)
45581.8 Da
IEP (calculated)
6.794
GRAVY (calculated)
-0.647
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTANNGQDS SSATAAGTTP PLQQPPPPPP PQQQQQWQQH QQWMAAMAMM QQQQMMMYPH QYAPYHHHHP QFQYAPPSYH LKNQQQRGGG DDVKTLWIGD
101: LLHWMDETYL HTCFSHTNQV SSVKVIRNKQ TCQSEGYGFV EFLSRSAAEE VLQSYSGVTM PNAEQPFRLN WASFSTGEKR ASENGPDLSI FVGDLAPDVT
201: DTVLLETFAA YQSVKGAKVV IDSNTGRSKG YGFVRFGDEN ERSKALTEMN GAFCSSRQMR VGVATPKRAA AYGQLNGSQA LTLAGGHGGN GSMADGESNN
301: STIFVGGLDA DVTEEDLMQR FSQFGEVVSV KIPVGKGCGF VQFGNRQSAE EAIGSLNGTV IGKNTVRLSW GRSPNKQWRS DSGNQWNGGY SRGQGYNNGN
401: ANHDSNMYAT AAAAAPGAS
101: LLHWMDETYL HTCFSHTNQV SSVKVIRNKQ TCQSEGYGFV EFLSRSAAEE VLQSYSGVTM PNAEQPFRLN WASFSTGEKR ASENGPDLSI FVGDLAPDVT
201: DTVLLETFAA YQSVKGAKVV IDSNTGRSKG YGFVRFGDEN ERSKALTEMN GAFCSSRQMR VGVATPKRAA AYGQLNGSQA LTLAGGHGGN GSMADGESNN
301: STIFVGGLDA DVTEEDLMQR FSQFGEVVSV KIPVGKGCGF VQFGNRQSAE EAIGSLNGTV IGKNTVRLSW GRSPNKQWRS DSGNQWNGGY SRGQGYNNGN
401: ANHDSNMYAT AAAAAPGAS
001: MQTPNNNGST DSVLPPTSAG TTPPPPLQQS TPPPQQQQQQ QWQQQQQWMA AMQQYPAAAM AMMQQQQMMM YPHPQYAPYN QAAYQQHPQF QYAAYQQQQQ
101: QHHQSQQQPR GGSGGDDVKT LWVGDLLHWM DETYLHTCFS HTNEVSSVKV IRNKQTCQSE GYGFVEFLSR SAAEEALQSF SGVTMPNAEQ PFRLNWASFS
201: TGEKRASENG PDLSIFVGDL APDVSDAVLL ETFAGRYPSV KGAKVVIDSN TGRSKGYGFV RFGDENERSR AMTEMNGAFC SSRQMRVGIA TPKRAAAYGQ
301: QNGSQALTLA GGHGGNGSMS DGESNNSTIF VGGLDADVTE EDLMQPFSDF GEVVSVKIPV GKGCGFVQFA NRQSAEEAIG NLNGTVIGKN TVRLSWGRSP
401: NKQVQENFSW ICVFKHYMHF YWYGPMVQVK LSFRVLLGLY ISVFMGWIKL
101: QHHQSQQQPR GGSGGDDVKT LWVGDLLHWM DETYLHTCFS HTNEVSSVKV IRNKQTCQSE GYGFVEFLSR SAAEEALQSF SGVTMPNAEQ PFRLNWASFS
201: TGEKRASENG PDLSIFVGDL APDVSDAVLL ETFAGRYPSV KGAKVVIDSN TGRSKGYGFV RFGDENERSR AMTEMNGAFC SSRQMRVGIA TPKRAAAYGQ
301: QNGSQALTLA GGHGGNGSMS DGESNNSTIF VGGLDADVTE EDLMQPFSDF GEVVSVKIPV GKGCGFVQFA NRQSAEEAIG NLNGTVIGKN TVRLSWGRSP
401: NKQVQENFSW ICVFKHYMHF YWYGPMVQVK LSFRVLLGLY ISVFMGWIKL
Arabidopsis Description
ATRBP47ARNA-binding protein 47A [Source:TAIR;Acc:AT1G49600]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.