Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14290 | Canola | nucleus | 95.77 | 97.84 |
| Bra010418.1-P | Field mustard | nucleus | 84.27 | 94.97 |
| CDX89287 | Canola | nucleus | 84.27 | 86.72 |
| AT4G27000.1 | Thale cress | nucleus | 81.92 | 84.1 |
| CDY29263 | Canola | nucleus | 82.63 | 84.01 |
| CDY46671 | Canola | nucleus | 83.33 | 82.75 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 82.39 | 82.39 |
| CDY17286 | Canola | nucleus | 67.14 | 70.62 |
| CDY19874 | Canola | nucleus | 67.37 | 68.5 |
| PGSC0003DMT400057203 | Potato | cytosol | 60.56 | 64.02 |
| Solyc07g064510.2.1 | Tomato | plastid | 61.27 | 63.66 |
| VIT_19s0090g00280.t01 | Wine grape | nucleus | 63.15 | 58.1 |
| CDY34835 | Canola | nucleus | 53.52 | 58.02 |
| CDY06734 | Canola | mitochondrion | 34.51 | 48.2 |
| CDY29341 | Canola | nucleus | 45.07 | 45.82 |
| CDX92304 | Canola | nucleus | 45.54 | 45.75 |
| CDX99265 | Canola | nucleus | 45.54 | 45.75 |
| CDY22988 | Canola | nucleus | 45.07 | 45.71 |
| CDY28101 | Canola | nucleus | 46.01 | 45.69 |
| CDX82310 | Canola | nucleus | 44.13 | 45.63 |
| CDY68866 | Canola | nucleus | 44.37 | 45.54 |
| CDY32840 | Canola | nucleus | 44.84 | 45.37 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 53.99 | 45.36 |
| CDY50959 | Canola | nucleus | 45.77 | 45.35 |
| CDY52067 | Canola | nucleus | 44.37 | 45.11 |
| CDY16528 | Canola | nucleus | 44.84 | 45.05 |
| CDX95176 | Canola | nucleus | 43.9 | 44.63 |
| CDX95462 | Canola | nucleus | 45.31 | 44.47 |
| CDY18570 | Canola | nucleus | 45.31 | 44.47 |
| CDY13992 | Canola | nucleus | 43.66 | 44.39 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 44.37 | 43.95 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 44.37 | 43.95 |
| CDX92537 | Canola | nucleus | 42.96 | 43.68 |
| Zm00001d021149_P001 | Maize | cytosol | 16.67 | 43.03 |
| CDY63384 | Canola | mitochondrion, nucleus | 24.41 | 24.88 |
| CDY02486 | Canola | nucleus | 24.41 | 24.76 |
| CDY61476 | Canola | nucleus | 24.18 | 24.58 |
| CDY51403 | Canola | nucleus | 24.18 | 24.52 |
| CDY33092 | Canola | nucleus | 24.41 | 24.47 |
| CDX81822 | Canola | mitochondrion, nucleus | 24.18 | 18.9 |
| CDY67365 | Canola | plastid | 12.91 | 18.84 |
| CDY59539 | Canola | nucleus | 14.32 | 16.67 |
| CDY43894 | Canola | nucleus | 14.08 | 16.48 |
| CDY72408 | Canola | plastid | 3.52 | 16.13 |
| CDY66740 | Canola | nucleus | 14.32 | 16.01 |
| CDY67617 | Canola | nucleus | 14.32 | 16.01 |
| CDX69025 | Canola | nucleus, plastid | 22.77 | 15.88 |
| CDX75397 | Canola | nucleus, plastid | 22.54 | 15.58 |
| CDY38939 | Canola | nucleus | 23.47 | 15.53 |
| CDX89562 | Canola | nucleus | 23.24 | 15.35 |
| CDY62723 | Canola | cytosol | 22.07 | 15.23 |
| CDY51957 | Canola | cytosol, plastid | 22.07 | 15.19 |
| CDX89664 | Canola | cytosol | 21.83 | 15.15 |
| CDY46079 | Canola | nucleus | 22.07 | 14.94 |
| CDX79296 | Canola | plastid | 6.34 | 14.75 |
| CDY67921 | Canola | nucleus | 22.07 | 14.57 |
| CDY57754 | Canola | nucleus | 7.28 | 14.55 |
| CDY54068 | Canola | cytosol | 22.3 | 14.55 |
| CDY56198 | Canola | cytosol | 16.67 | 14.52 |
| CDY51045 | Canola | cytosol | 22.07 | 14.4 |
| CDX71223 | Canola | cytosol | 21.36 | 14.26 |
| CDY41472 | Canola | cytosol, plastid | 21.13 | 14.04 |
| CDY30168 | Canola | cytosol | 17.37 | 13.75 |
| CDY03685 | Canola | nucleus | 20.42 | 13.53 |
| CDY37935 | Canola | nucleus | 20.66 | 13.52 |
| CDY36634 | Canola | nucleus | 20.42 | 13.41 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 20.19 | 13.27 |
| CDY36684 | Canola | plastid | 20.66 | 13.23 |
| CDX72826 | Canola | plastid | 21.13 | 13.16 |
| CDX96344 | Canola | plastid | 21.13 | 13.16 |
| CDY33264 | Canola | mitochondrion, nucleus | 5.63 | 12.0 |
| CDY37229 | Canola | cytosol | 4.93 | 9.86 |
| CDY67364 | Canola | nucleus | 6.57 | 9.56 |
| CDX91689 | Canola | nucleus | 4.93 | 6.89 |
| CDX92325 | Canola | nucleus | 4.93 | 6.52 |
| CDY08990 | Canola | cytosol | 0.94 | 4.04 |
| CDX79295 | Canola | cytosol, plastid | 0.94 | 4.0 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | GO:A0A078JFP4 | UniProt:A0A078JFP4 | EnsemblPlants:CDY66423 | ProteinID:CDY66423 |
| ProteinID:CDY66423.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00053596001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43955 |
| PANTHER:PTHR43955:SF8 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EEE619 |
| SEG:seg | : | : | : | : | : |
Description
BnaAnng22220DBnaAnng22220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JFP4]
Coordinates
chrLK035257:+:6425..9427
Molecular Weight (calculated)
46290.6 Da
IEP (calculated)
6.240
GRAVY (calculated)
-0.776
Length
426 amino acids
Sequence
(BLAST)
(BLAST)
001: MMQQPPPAAN GAVAAGPGDQ QAYHHQQSWM MQPHQAQPPA GWNPQSAPSL GQPLQHPQYS GGSQTPGSGD EIRSLWIGDL QPWMDENYLV NSFSITGEVQ
101: QAKVIRNKQS GYSEGYGFIE FVSHAAAERI LQTYNGALMP NSEQTFKLNW AGERRQSEGP EHTVFVGDLA PDVTDYMLTE TFKNVYSSVK GAKVVIDRTT
201: GRSKGYGFVR FGDESEQMRA MTEMNGQYCS SRPMRTGPAA NKKPLTMQQP GGYQNPQGNA GESDLTNTTI FVGALDESVT EDVLKSVFGQ FGELVHVKIP
301: AGKRCGFVQY ANRACAEQGL NALNGTQLGG QSIRLSWGRT TSNKQTQPDQ AQYGGGGGYY GYPPQGYEGY GYAPPPQDPN AYYGGYPGAG YGNYQQPGGG
401: YQQPGGGYQQ QQQILKGHNI TYGHET
101: QAKVIRNKQS GYSEGYGFIE FVSHAAAERI LQTYNGALMP NSEQTFKLNW AGERRQSEGP EHTVFVGDLA PDVTDYMLTE TFKNVYSSVK GAKVVIDRTT
201: GRSKGYGFVR FGDESEQMRA MTEMNGQYCS SRPMRTGPAA NKKPLTMQQP GGYQNPQGNA GESDLTNTTI FVGALDESVT EDVLKSVFGQ FGELVHVKIP
301: AGKRCGFVQY ANRACAEQGL NALNGTQLGG QSIRLSWGRT TSNKQTQPDQ AQYGGGGGYY GYPPQGYEGY GYAPPPQDPN AYYGGYPGAG YGNYQQPGGG
401: YQQPGGGYQQ QQQILKGHNI TYGHET
001: MMQQPPPASN GAATGPGQIP SDQQAYLQQQ QSWMMQHQQQ QQGQPPAGWN QQSAPSSGQP QQQQYGGGGS QNPGSAGEIR SLWIGDLQPW MDENYLMNVF
101: GLTGEATAAK VIRNKQNGYS EGYGFIEFVN HATAERNLQT YNGAPMPSSE QAFRLNWAQL GAGERRQAEG PEHTVFVGDL APDVTDHMLT ETFKAVYSSV
201: KGAKVVNDRT TGRSKGYGFV RFADESEQIR AMTEMNGQYC SSRPMRTGPA ANKKPLTMQP ASYQNTQGNS GESDPTNTTI FVGAVDQSVT EDDLKSVFGQ
301: FGELVHVKIP AGKRCGFVQY ANRACAEQAL SVLNGTQLGG QSIRLSWGRS PSNKQTQPDQ AQYGGGGGYY GYPPQGYEAY GYAPPPQDPN AYYGGYAGGG
401: YGNYQQPGGY QQQQQ
101: GLTGEATAAK VIRNKQNGYS EGYGFIEFVN HATAERNLQT YNGAPMPSSE QAFRLNWAQL GAGERRQAEG PEHTVFVGDL APDVTDHMLT ETFKAVYSSV
201: KGAKVVNDRT TGRSKGYGFV RFADESEQIR AMTEMNGQYC SSRPMRTGPA ANKKPLTMQP ASYQNTQGNS GESDPTNTTI FVGAVDQSVT EDDLKSVFGQ
301: FGELVHVKIP AGKRCGFVQY ANRACAEQAL SVLNGTQLGG QSIRLSWGRS PSNKQTQPDQ AQYGGGGGYY GYPPQGYEAY GYAPPPQDPN AYYGGYAGGG
401: YGNYQQPGGY QQQQQ
Arabidopsis Description
RBP45CPolyadenylate-binding protein RBP45C [Source:UniProtKB/Swiss-Prot;Acc:Q93W34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.