Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32840 | Canola | nucleus | 97.17 | 97.86 |
| CDY50959 | Canola | nucleus | 93.4 | 92.09 |
| CDY28101 | Canola | nucleus | 92.92 | 91.84 |
| CDY68866 | Canola | nucleus | 86.08 | 87.95 |
| CDY29341 | Canola | nucleus | 86.56 | 87.59 |
| CDY22988 | Canola | nucleus | 75.47 | 76.19 |
| AT1G49600.3 | Thale cress | nucleus | 80.66 | 76.0 |
| CDX82310 | Canola | nucleus | 73.11 | 75.24 |
| CDX95462 | Canola | nucleus | 76.89 | 75.12 |
| CDX92304 | Canola | nucleus | 74.76 | 74.76 |
| CDX99265 | Canola | nucleus | 74.76 | 74.76 |
| CDY18570 | Canola | nucleus | 76.42 | 74.65 |
| Bra014216.1-P | Field mustard | nucleus | 88.68 | 65.73 |
| VIT_03s0063g00850.t01 | Wine grape | nucleus | 63.68 | 65.22 |
| Solyc01g108500.2.1 | Tomato | nucleus | 61.79 | 63.44 |
| GSMUA_Achr9P15210_001 | Banana | nucleus | 45.75 | 62.18 |
| PGSC0003DMT400066648 | Potato | nucleus | 61.56 | 62.14 |
| GSMUA_Achr3P06840_001 | Banana | nucleus | 45.28 | 61.54 |
| KRH50251 | Soybean | nucleus | 62.5 | 61.48 |
| KRH71168 | Soybean | nucleus | 62.26 | 61.25 |
| GSMUA_Achr10P... | Banana | nucleus | 44.81 | 60.51 |
| GSMUA_Achr6P10190_001 | Banana | nucleus | 44.34 | 60.06 |
| Solyc10g050860.1.1 | Tomato | nucleus | 60.14 | 59.58 |
| TraesCS5B01G241400.1 | Wheat | nucleus | 47.41 | 58.77 |
| TraesCS5A01G243500.1 | Wheat | nucleus | 47.17 | 58.48 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 47.17 | 58.48 |
| Os02t0567900-01 | Rice | cytosol, nucleus | 34.2 | 55.98 |
| CDY52067 | Canola | nucleus | 53.3 | 53.94 |
| GSMUA_Achr6P09470_001 | Banana | nucleus | 18.63 | 53.74 |
| CDX95176 | Canola | nucleus | 53.07 | 53.7 |
| CDY06734 | Canola | mitochondrion | 37.5 | 52.13 |
| TraesCS6A01G204400.1 | Wheat | mitochondrion | 45.99 | 51.45 |
| Os04t0449900-01 | Rice | plastid | 46.46 | 50.9 |
| GSMUA_Achr3P01720_001 | Banana | mitochondrion | 48.35 | 50.87 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 50.0 | 50.0 |
| HORVU5Hr1G069180.3 | Barley | nucleus, peroxisome, plastid | 50.71 | 49.65 |
| KXG35789 | Sorghum | nucleus | 51.18 | 49.54 |
| Zm00001d020748_P002 | Maize | plasma membrane | 50.24 | 49.19 |
| CDY34835 | Canola | nucleus | 45.28 | 48.85 |
| HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 47.17 | 47.96 |
| TraesCS2A01G317700.2 | Wheat | plastid | 47.64 | 47.64 |
| TraesCS2D01G315400.2 | Wheat | plastid | 47.64 | 47.64 |
| TraesCS2B01G335700.1 | Wheat | plastid | 47.17 | 47.62 |
| EES10898 | Sorghum | nucleus | 46.93 | 47.04 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 46.23 | 47.0 |
| CDX89287 | Canola | nucleus | 45.52 | 46.62 |
| CDY17286 | Canola | nucleus | 44.1 | 46.17 |
| EES05289 | Sorghum | plastid | 46.7 | 45.52 |
| Os09t0462700-01 | Rice | mitochondrion, nucleus, plastid | 47.17 | 45.35 |
| CDY14290 | Canola | nucleus | 44.58 | 45.32 |
| CDY29263 | Canola | nucleus | 44.58 | 45.11 |
| Zm00001d050838_P001 | Maize | plastid | 45.52 | 44.88 |
| CDY66423 | Canola | nucleus | 45.05 | 44.84 |
| CDY46671 | Canola | nucleus | 45.28 | 44.76 |
| CDY19874 | Canola | nucleus | 43.87 | 44.39 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 44.58 | 44.37 |
| HORVU2Hr1G078910.4 | Barley | mitochondrion, nucleus | 44.58 | 44.26 |
| TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 46.7 | 43.42 |
| Zm00001d025551_P002 | Maize | plastid | 44.81 | 42.04 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 46.46 | 41.56 |
| CDX92537 | Canola | nucleus | 40.33 | 40.81 |
| CDY13992 | Canola | nucleus | 40.33 | 40.81 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 39.86 | 39.3 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 39.86 | 39.3 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 45.52 | 38.07 |
| CDY63384 | Canola | mitochondrion, nucleus | 25.94 | 26.32 |
| CDY51403 | Canola | nucleus | 25.0 | 25.24 |
| CDY33092 | Canola | nucleus | 25.24 | 25.18 |
| CDY61476 | Canola | nucleus | 24.76 | 25.06 |
| CDY02486 | Canola | nucleus | 24.76 | 25.0 |
| CDY67365 | Canola | plastid | 16.04 | 23.29 |
| CDX81822 | Canola | mitochondrion, nucleus | 25.94 | 20.18 |
| CDY72408 | Canola | plastid | 3.54 | 16.13 |
| CDY59539 | Canola | nucleus | 13.44 | 15.57 |
| CDY66740 | Canola | nucleus | 13.68 | 15.22 |
| CDY67617 | Canola | nucleus | 13.68 | 15.22 |
| CDX69025 | Canola | nucleus, plastid | 21.93 | 15.22 |
| CDY43894 | Canola | nucleus | 12.97 | 15.11 |
| CDX75397 | Canola | nucleus, plastid | 21.93 | 15.1 |
| CDY51957 | Canola | cytosol, plastid | 21.93 | 15.02 |
| CDY57754 | Canola | nucleus | 7.55 | 15.02 |
| CDX89664 | Canola | cytosol | 21.7 | 14.98 |
| CDY62723 | Canola | cytosol | 21.7 | 14.91 |
| CDY38939 | Canola | nucleus | 22.41 | 14.75 |
| CDX89562 | Canola | nucleus | 22.41 | 14.73 |
| CDX71223 | Canola | cytosol | 21.93 | 14.58 |
| CDX79296 | Canola | plastid | 6.13 | 14.21 |
| CDY56198 | Canola | cytosol | 16.27 | 14.11 |
| CDY54068 | Canola | cytosol | 21.23 | 13.78 |
| CDY51045 | Canola | cytosol | 20.99 | 13.63 |
| CDY36634 | Canola | nucleus | 20.75 | 13.56 |
| CDY03685 | Canola | nucleus | 20.28 | 13.37 |
| CDY46079 | Canola | nucleus | 19.81 | 13.35 |
| CDX72826 | Canola | plastid | 21.46 | 13.3 |
| CDX96344 | Canola | plastid | 21.46 | 13.3 |
| CDY41472 | Canola | cytosol, plastid | 20.05 | 13.26 |
| CDY30168 | Canola | cytosol | 16.75 | 13.2 |
| CDY37935 | Canola | nucleus | 20.05 | 13.06 |
| CDY36684 | Canola | plastid | 20.28 | 12.93 |
| CDY67921 | Canola | nucleus | 19.58 | 12.87 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 19.58 | 12.81 |
| CDY33264 | Canola | mitochondrion, nucleus | 5.9 | 12.5 |
| CDX92325 | Canola | nucleus | 6.37 | 8.39 |
| CDY67364 | Canola | nucleus | 5.19 | 7.51 |
| CDX91689 | Canola | nucleus | 2.83 | 3.93 |
| CDY37229 | Canola | cytosol | 1.89 | 3.76 |
| CDX79295 | Canola | cytosol, plastid | 0.0 | 0.0 |
| CDY08990 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | GO:A0A078FVU1 | UniProt:A0A078FVU1 | EnsemblPlants:CDY16528 | ProteinID:CDY16528 |
| ProteinID:CDY16528.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00091139001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43955 |
| PANTHER:PTHR43955:SF6 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EED526 |
| SEG:seg | : | : | : | : | : |
Description
BnaA08g02390DBnaA08g02390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FVU1]
Coordinates
chrLK032064:+:723541..728080
Molecular Weight (calculated)
46270.4 Da
IEP (calculated)
6.373
GRAVY (calculated)
-0.694
Length
424 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTTNNGPDS SSAGTTPPPL QQPTPPPQQQ HWQNQQQWMA AMQYPMAMMQ QQQHMMMYPH QYAPYTQGHY QHPPQFHYAP YHQQQQQQRG GSGGDDVKTL
101: WVGDLLHWMD ETYLHTCFSH TNEVSSVKVI RNKQTNQSEG YGFVEFLSRS AAEEVLQSYS GVTMPNADQP FRLNWASFST GEKRASENGG PDLSIFVGDL
201: APDVTDALLL ETFAGYQSVK GAKVVIDSNT GRSKGYGFVR FGDESERSRA LTEMNGAFCS SRQMRVGIAT PKRASAYGQQ NGSQALTLAG GHGANGSASD
301: GDSNNSTIFV GGIDADVTEE DLMQPFSQFG EVVSVKIPVG KGCGFVQFGN RKSAEEAIEN LNGTVIGKNT VRLSWGRSPN RQWRGEAGHQ WNGGYSRGQG
401: YSNGYANQDS NMYATAAAAV PGAS
101: WVGDLLHWMD ETYLHTCFSH TNEVSSVKVI RNKQTNQSEG YGFVEFLSRS AAEEVLQSYS GVTMPNADQP FRLNWASFST GEKRASENGG PDLSIFVGDL
201: APDVTDALLL ETFAGYQSVK GAKVVIDSNT GRSKGYGFVR FGDESERSRA LTEMNGAFCS SRQMRVGIAT PKRASAYGQQ NGSQALTLAG GHGANGSASD
301: GDSNNSTIFV GGIDADVTEE DLMQPFSQFG EVVSVKIPVG KGCGFVQFGN RKSAEEAIEN LNGTVIGKNT VRLSWGRSPN RQWRGEAGHQ WNGGYSRGQG
401: YSNGYANQDS NMYATAAAAV PGAS
001: MQTPNNNGST DSVLPPTSAG TTPPPPLQQS TPPPQQQQQQ QWQQQQQWMA AMQQYPAAAM AMMQQQQMMM YPHPQYAPYN QAAYQQHPQF QYAAYQQQQQ
101: QHHQSQQQPR GGSGGDDVKT LWVGDLLHWM DETYLHTCFS HTNEVSSVKV IRNKQTCQSE GYGFVEFLSR SAAEEALQSF SGVTMPNAEQ PFRLNWASFS
201: TGEKRASENG PDLSIFVGDL APDVSDAVLL ETFAGRYPSV KGAKVVIDSN TGRSKGYGFV RFGDENERSR AMTEMNGAFC SSRQMRVGIA TPKRAAAYGQ
301: QNGSQALTLA GGHGGNGSMS DGESNNSTIF VGGLDADVTE EDLMQPFSDF GEVVSVKIPV GKGCGFVQFA NRQSAEEAIG NLNGTVIGKN TVRLSWGRSP
401: NKQWRSDSGN QWNGGYSRGQ GYNNGYANQD SNMYATAAAA VPGAS
101: QHHQSQQQPR GGSGGDDVKT LWVGDLLHWM DETYLHTCFS HTNEVSSVKV IRNKQTCQSE GYGFVEFLSR SAAEEALQSF SGVTMPNAEQ PFRLNWASFS
201: TGEKRASENG PDLSIFVGDL APDVSDAVLL ETFAGRYPSV KGAKVVIDSN TGRSKGYGFV RFGDENERSR AMTEMNGAFC SSRQMRVGIA TPKRAAAYGQ
301: QNGSQALTLA GGHGGNGSMS DGESNNSTIF VGGLDADVTE EDLMQPFSDF GEVVSVKIPV GKGCGFVQFA NRQSAEEAIG NLNGTVIGKN TVRLSWGRSP
401: NKQWRSDSGN QWNGGYSRGQ GYNNGYANQD SNMYATAAAA VPGAS
Arabidopsis Description
ATRBP47ARNA-binding protein 47A [Source:TAIR;Acc:AT1G49600]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.