Factsheet for TraesCS2A01G317700.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
nucleus 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, peroxisome, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G315400.2	Wheat	plastid	99.53	99.53
TraesCS2B01G335700.1	Wheat	plastid	98.58	99.52
EES10898	Sorghum	nucleus	91.04	91.25
Os04t0449900-01	Rice	plastid	83.25	91.21
TraesCS6A01G204400.1	Wheat	mitochondrion	77.12	86.28
HORVU2Hr1G078910.4	Barley	mitochondrion, nucleus	84.43	83.84
Zm00001d025551_P002	Maize	plastid	86.32	80.97
TraesCS5A01G243500.1	Wheat	nucleus	55.66	69.01
GSMUA_Achr10P...	Banana	nucleus	49.76	67.2
GSMUA_Achr6P10190_001	Banana	nucleus	48.35	65.5
GSMUA_Achr6P09470_001	Banana	nucleus	20.75	59.86
GSMUA_Achr3P01720_001	Banana	mitochondrion	55.42	58.31
Bra027446.1-P	Field mustard	cytosol	43.4	57.5
PGSC0003DMT400020621	Potato	nucleus	52.59	56.31
KRH61258	Soybean	nucleus	54.25	56.23
KRH05723	Soybean	nucleus	54.01	55.45
VIT_18s0001g11080.t01	Wine grape	nucleus	53.54	54.31
KRH51956	Soybean	nucleus	52.36	54.01
KRH15315	Soybean	nucleus	53.77	53.65
Solyc01g108500.2.1	Tomato	nucleus	50.0	51.33
Solyc04g079310.2.1	Tomato	nucleus	54.25	51.0
CDY06734	Canola	mitochondrion	36.32	50.49
AT1G47500.1	Thale cress	nucleus	51.18	50.0
PGSC0003DMT400066648	Potato	nucleus	49.53	50.0
Bra018813.1-P	Field mustard	mitochondrion, nucleus	45.75	49.74
CDY52067	Canola	nucleus	48.82	49.4
CDX95176	Canola	nucleus	48.82	49.4
VIT_03s0063g00850.t01	Wine grape	nucleus	48.11	49.28
AT1G47490.1	Thale cress	nucleus	49.76	48.84
TraesCS7A01G295700.3	Wheat	plastid	35.38	48.23
CDY32840	Canola	nucleus	47.41	47.74
CDY16528	Canola	nucleus	47.64	47.64
KRH50251	Soybean	nucleus	48.35	47.56
KRH71168	Soybean	nucleus	48.35	47.56
CDY28101	Canola	nucleus	47.64	47.09
CDY29341	Canola	nucleus	46.46	47.02
CDY50959	Canola	nucleus	47.41	46.74
CDX92304	Canola	nucleus	46.46	46.46
Bra022389.1-P	Field mustard	nucleus	46.46	46.24
Bra040663.1-P	Field mustard	nucleus	40.57	46.24
CDX99265	Canola	nucleus	46.23	46.23
CDY68866	Canola	nucleus	45.05	46.02
TraesCS2A01G473000.1	Wheat	nucleus	47.17	45.87
TraesCS6A01G100800.1	Wheat	nucleus	44.1	45.61
CDY22988	Canola	nucleus	45.05	45.48
Solyc10g050860.1.1	Tomato	nucleus	45.75	45.33
CDX95462	Canola	nucleus	45.52	44.47
CDX82310	Canola	nucleus	43.16	44.42
Bra001735.1-P	Field mustard	nucleus	43.16	44.42
CDY18570	Canola	nucleus	45.28	44.24
AT3G19130.1	Thale cress	nucleus	45.28	44.14
TraesCS4A01G014200.1	Wheat	nucleus	41.98	42.79
AT1G49600.3	Thale cress	nucleus	44.81	42.22
Bra037538.1-P	Field mustard	nucleus	39.39	41.44
TraesCS2A01G256500.1	Wheat	nucleus	33.96	40.45
TraesCS2A01G221900.2	Wheat	nucleus	43.4	39.66
Bra014216.1-P	Field mustard	nucleus	41.98	31.12
TraesCS2A01G169100.1	Wheat	nucleus	24.53	24.3
TraesCS7A01G252200.1	Wheat	mitochondrion, nucleus	25.24	23.94
TraesCS4A01G150000.1	Wheat	mitochondrion	23.82	22.54
TraesCS1A01G143500.1	Wheat	nucleus	14.86	17.12
TraesCS3A01G076800.1	Wheat	mitochondrion, nucleus, plasma membrane, plastid	17.69	13.44
TraesCS4A01G099500.1	Wheat	cytosol	20.52	13.34
TraesCS7A01G288700.1	Wheat	nucleus	20.75	13.29
TraesCS5A01G161800.2	Wheat	nucleus	20.05	13.06
TraesCS2A01G359000.1	Wheat	cytosol	20.05	12.78

Protein Annotations

EnsemblPlants:TraesCS2A01G317700.2	EnsemblPlantsGene:TraesCS2A01G317700	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	PANTHER:PTHR43955
PANTHER:PTHR43955:SF4	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928
TIGR:cd12344	TIGR:cd12345	TIGR:cd12346	MapMan:16.9.4	:	:

Description

No Description!

Coordinates

chr2A:+:543120408..543124758

Molecular Weight (calculated)

46231.0 Da

IEP (calculated)

8.536

GRAVY (calculated)

-0.674

Length

424 amino acids

Sequence
(BLAST)

001: MQMAATTTEP QVAVPPHHPH AHPHPHPPPH HPHPHHHMPQ PRWVVLPYPP PSMVAAPPPP PPQFSKHYAP GPPPPPAAAG RRTPTPPAAG SGGNGCEENK
101: TIWVGDLQYW MDENYLHNCF GPSGEVVTIK VIRNRQTGQS EGYGFVEFFS HASADKALQN FTGHVMPNTD RAFKLNWASY SMGEKRSEVV SDHSIFVGDL
201: AADVTDEMLM ELFASKYRSV KGAKVIIDAN TGRSRGYGFV RFGDDTDKAH AMTEMNGVYC STRPIRVGPA TPRRTSGDSG SSTPGHSDGD SNNRTVYVGG
301: LDPNVSEDEL RKSFAKYGDV ASVKIPLGKQ CGFVQYVNRT DAEEALQGLN GAVIGKQAVR LSWGRSPSHK QSRGDSGNRR NNNNMYYGTP FYGGYGYASP
401: VPHPNMYAPA YGAYPFYGNQ QLVS

Best Arabidopsis Sequence Match ( AT1G47490.1 )
(BLAST)

001: MADVKIQSES ESSDSHPVVD NQPPPPPPPP QQPAKEEENQ PKTSPTPPPH WMRYPPTVII PHQMMYAPPP FPPYHQYPNH HHLHHQSRGN KHQNAFNGEN
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS

Arabidopsis Description

RBP47CPolyadenylate-binding protein RBP47C [Source:UniProtKB/Swiss-Prot;Acc:Q9SX79]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.