Factsheet for Bra022389.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92304	Canola	nucleus	99.06	99.53
Bra001735.1-P	Field mustard	nucleus	84.51	87.38
Bra037538.1-P	Field mustard	nucleus	79.81	84.37
AT3G19130.1	Thale cress	nucleus	80.99	79.31
Bra018813.1-P	Field mustard	mitochondrion, nucleus	70.42	76.92
Bra040663.1-P	Field mustard	nucleus	63.62	72.85
Solyc01g108500.2.1	Tomato	nucleus	61.74	63.68
PGSC0003DMT400066648	Potato	nucleus	61.5	62.38
VIT_03s0063g00850.t01	Wine grape	nucleus	60.56	62.32
KRH50251	Soybean	nucleus	60.8	60.09
KRH71168	Soybean	nucleus	60.33	59.63
GSMUA_Achr9P15210_001	Banana	nucleus	43.19	58.97
GSMUA_Achr3P06840_001	Banana	nucleus	43.19	58.97
GSMUA_Achr10P...	Banana	nucleus	43.43	58.92
Solyc10g050860.1.1	Tomato	nucleus	58.69	58.41
Bra027446.1-P	Field mustard	cytosol	43.43	57.81
GSMUA_Achr6P10190_001	Banana	nucleus	42.02	57.19
TraesCS5D01G250100.1	Wheat	nucleus	44.6	55.56
TraesCS5B01G241400.1	Wheat	nucleus	44.37	55.26
TraesCS5A01G243500.1	Wheat	nucleus	44.13	54.97
Os02t0567900-01	Rice	cytosol, nucleus	31.92	52.51
GSMUA_Achr6P09470_001	Banana	nucleus	17.37	50.34
GSMUA_Achr3P01720_001	Banana	mitochondrion	47.18	49.88
Bra014216.1-P	Field mustard	nucleus	65.96	49.13
TraesCS6A01G204400.1	Wheat	mitochondrion	43.19	48.55
Os04t0449900-01	Rice	plastid	43.9	48.32
KXG35789	Sorghum	nucleus	49.53	48.17
Zm00001d020748_P002	Maize	plasma membrane	48.83	48.04
Zm00001d005912_P001	Maize	cytosol, nucleus, peroxisome, plastid	47.65	47.88
HORVU5Hr1G069180.3	Barley	nucleus, peroxisome, plastid	48.59	47.81
TraesCS2A01G317700.2	Wheat	plastid	46.24	46.46
Bra019078.1-P	Field mustard	nucleus	44.84	46.36
TraesCS2D01G315400.2	Wheat	plastid	46.01	46.23
TraesCS2B01G335700.1	Wheat	plastid	45.54	46.19
Bra031774.1-P	Field mustard	nucleus	42.25	45.69
HORVU6Hr1G048390.1	Barley	cytoskeleton, nucleus, peroxisome	44.37	45.32
Bra002947.1-P	Field mustard	nucleus	41.78	44.95
EES10898	Sorghum	nucleus	44.6	44.92
TraesCS6D01G184600.1	Wheat	cytosol, nucleus, plastid	43.66	44.6
Bra010418.1-P	Field mustard	nucleus	39.44	44.44
Os09t0462700-01	Rice	mitochondrion, nucleus, plastid	45.07	43.54
HORVU2Hr1G078910.4	Barley	mitochondrion, nucleus	43.19	43.09
EES05289	Sorghum	plastid	43.9	42.99
Zm00001d050838_P001	Maize	plastid	43.19	42.79
Bra026387.1-P	Field mustard	nucleus	39.44	42.75
TraesCS6B01G228100.1	Wheat	endoplasmic reticulum, plastid, vacuole	43.9	41.01
Bra002230.1-P	Field mustard	nucleus	39.67	40.33
Zm00001d025551_P002	Maize	plastid	42.02	39.6
Zm00001d016897_P002	Maize	endoplasmic reticulum, nucleus, peroxisome, plastid	43.9	39.45
Bra006502.1-P	Field mustard	nucleus	39.2	38.84
Bra030985.1-P	Field mustard	mitochondrion, nucleus	26.76	27.27
Bra030908.1-P	Field mustard	nucleus	25.12	25.54
Bra037962.1-P	Field mustard	nucleus	24.88	25.18
Bra034301.1-P	Field mustard	mitochondrion	6.34	24.32
Bra037217.1-P	Field mustard	nucleus	14.08	15.75
Bra039603.1-P	Field mustard	nucleus	13.38	15.66
Bra013104.1-P	Field mustard	cytosol	22.07	15.26
Bra016371.1-P	Field mustard	plastid	21.13	15.13
Bra018797.1-P	Field mustard	cytosol	22.07	14.4
Bra034603.1-P	Field mustard	cytosol, plastid	20.89	14.38
Bra011488.1-P	Field mustard	cytosol, plastid	20.66	14.36
Bra032172.1-P	Field mustard	cytosol	21.13	13.98
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	16.9	13.79
Bra007984.1-P	Field mustard	plastid	20.19	13.78
Bra015220.1-P	Field mustard	cytosol	18.31	13.49
Bra039195.1-P	Field mustard	cytosol, nucleus, plastid	19.72	13.42
Bra016118.1-P	Field mustard	plastid	20.66	12.87
Bra003915.1-P	Field mustard	cytosol	19.25	12.65
Bra022413.1-P	Field mustard	cytosol	11.5	10.99
Bra039841.1-P	Field mustard	cytosol	1.41	2.82

Protein Annotations

EnsemblPlants:Bra022389.1	EnsemblPlants:Bra022389.1-P	EnsemblPlantsGene:Bra022389	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR43955	PANTHER:PTHR43955:SF6	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002547F75	UniProt:M4E0U2	MapMan:16.9.4	:

Description

AT3G19130 (E=5e-170) ATRBP47B | ATRBP47B (RNA-binding protein 47B); RNA binding

Coordinates

chrA05:+:18006538..18008884

Molecular Weight (calculated)

47225.8 Da

IEP (calculated)

6.992

GRAVY (calculated)

-0.769

Length

426 amino acids

Sequence
(BLAST)

001: MQTTNGSDST PATPPVPQTT PPPPQQWQQH QQWMMQYPGA AAMMMMQHQQ QHMMMYPHQY VPYNHGGHYH HHPPHLQYAP YHQQHHNHHH QKPPHERGGS
101: GEDVKTLWVG DLLHWMDETY LHTCFSHTGE VSSVKVIRNK QTLQSEGYGF VEFLTRAAAE EVLQSFSGSI MPNSEQAFRL NWASFSTGEK RAVENGPELS
201: IFVGDLSPDV TDSMLQELFA ERYPSVKSAK VVIDSNTGRS KGYGFVRFGD ESERSRALTE MNGALCSNRQ MRVGVATPKR AVANQQQHSS QAVIVAGGHG
301: ANGFTAHGSQ SDGDSNNSTI FVGGLDPDLT EEDLRQPFTQ FGEVVSVKIP LGKGCGFVQL SNRKSADDAI QSLNGTVIGK NTVRLSWGRT PNKQWRGDNG
401: GYSRGQGYNN GGYANHHDSN NYPAET

Best Arabidopsis Sequence Match ( AT3G19130.1 )
(BLAST)

001: MQTTNGSDST LATSGATPPN QQTPPPPQQW QQQQQQQQQW MAAMQYPPAA AMMMMQQQQM LMYPHQYVPY NQGPYQQHHP QLHQYGSYQQ HQHQQHKAID
101: RGSGDDVKTL WVGDLLHWMD ETYLHSCFSH TGEVSSVKVI RNKLTSQSEG YGFVEFLSRA AAEEVLQNYS GSVMPNSDQP FRINWASFST GEKRAVENGP
201: DLSVFVGDLS PDVTDVLLHE TFSDRYPSVK SAKVVIDSNT GRSKGYGFVR FGDENERSRA LTEMNGAYCS NRQMRVGIAT PKRAIANQQQ HSSQAVILAG
301: GHGSNGSMGY GSQSDGESTN ATIFVGGIDP DVIDEDLRQP FSQFGEVVSV KIPVGKGCGF VQFADRKSAE DAIESLNGTV IGKNTVRLSW GRSPNKQWRG
401: DSGQQWNGGY SRGHGYNNGG GYANHHDSNN YHGEN

Arabidopsis Description

RBP47BPolyadenylate-binding protein RBP47B [Source:UniProtKB/Swiss-Prot;Acc:Q0WW84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.