Factsheet for Bra016118.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96344	Canola	plastid	99.85	99.85
CDX72826	Canola	plastid	98.83	98.83
Bra003915.1-P	Field mustard	cytosol	81.87	86.42
AT1G71770.1	Thale cress	cytosol, plastid	84.94	85.19
Bra007984.1-P	Field mustard	plastid	71.64	78.53
Bra016371.1-P	Field mustard	plastid	65.64	75.46
PGSC0003DMT400064531	Potato	cytosol	43.13	55.45
VIT_18s0001g02490.t01	Wine grape	plastid	51.32	53.26
KRG91724	Soybean	cytosol	50.29	52.76
Bra013104.1-P	Field mustard	cytosol	46.78	51.95
Bra034603.1-P	Field mustard	cytosol, plastid	46.78	51.7
Bra011488.1-P	Field mustard	cytosol, plastid	46.2	51.55
GSMUA_Achr5P24940_001	Banana	plastid	49.56	50.9
KRH08608	Soybean	endoplasmic reticulum	48.68	50.0
KRH70233	Soybean	cytosol	45.47	49.44
Bra018797.1-P	Field mustard	cytosol	47.08	49.31
Bra039195.1-P	Field mustard	cytosol, nucleus, plastid	44.88	49.04
Bra032172.1-P	Field mustard	cytosol	45.61	48.45
Bra015220.1-P	Field mustard	cytosol	39.33	46.54
Bra034301.1-P	Field mustard	mitochondrion	6.87	42.34
Bra022413.1-P	Field mustard	cytosol	26.17	40.13
Bra039841.1-P	Field mustard	cytosol	11.26	36.15
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	24.12	31.61
Bra039603.1-P	Field mustard	nucleus	13.45	25.27
Bra037217.1-P	Field mustard	nucleus	13.89	24.93
Bra027446.1-P	Field mustard	cytosol	11.55	24.69
Bra002947.1-P	Field mustard	nucleus	13.6	23.48
Bra019078.1-P	Field mustard	nucleus	13.6	22.57
Bra018813.1-P	Field mustard	mitochondrion, nucleus	12.87	22.56
Bra002230.1-P	Field mustard	nucleus	13.6	22.2
Bra010418.1-P	Field mustard	nucleus	11.84	21.43
Bra006502.1-P	Field mustard	nucleus	13.45	21.4
Bra031774.1-P	Field mustard	nucleus	12.28	21.32
Bra001735.1-P	Field mustard	nucleus	12.72	21.12
Bra022389.1-P	Field mustard	nucleus	12.87	20.66
Bra026387.1-P	Field mustard	nucleus	11.7	20.36
Bra030908.1-P	Field mustard	nucleus	12.43	20.29
Bra037962.1-P	Field mustard	nucleus	12.43	20.19
Bra030985.1-P	Field mustard	mitochondrion, nucleus	12.28	20.1
Bra040663.1-P	Field mustard	nucleus	10.53	19.35
Bra037538.1-P	Field mustard	nucleus	11.11	18.86
Bra014216.1-P	Field mustard	nucleus	11.11	13.29

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra016118	EnsemblPlants:Bra016118.1	EnsemblPlants:Bra016118.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	UniProt:M4DHZ1
InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658
PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF620	InterPro:RBD_domain_sf	InterPro:RRM_dom
InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570
TIGRFAMs:TIGR01628	UniParc:UPI0002541B4E	SEG:seg	:	:	:

Description

AT1G71770 (E=2e-288) PAB5 | PAB5 (POLY(A)-BINDING PROTEIN 5); RNA binding / poly(A) binding / translation initiation factor

Coordinates

chrA07:-:19323309..19325864

Molecular Weight (calculated)

74949.8 Da

IEP (calculated)

8.417

GRAVY (calculated)

-0.407

Length

684 amino acids

Sequence
(BLAST)

001: MAAAVASGIA PTTAMVDQVP NQPSVTVASP QSTTPFTQVA AVAAAAAAAE ALQAHPNSSL YVGDLDQSVN EAHLLDLFNQ VAPVQTVRVC RDLTRRSLGY
101: AYVNFANPDD AMRAMDSLNY TPIKDRPIRI MRSNRDPSTR LSGKGNVFIK NLDVSIDNKA LYDTFSIFGT ILSCKVAMDV TGRSKGYGFV QFEKEETAEA
201: AIDKLNGMLL NDKQVFVGHF VRRQDRARAE SGTVPRFTNV YVKNLPKEIG DDELKKTFGK YGDISSAVVM KDQSGSSRCF GFVNFESPEA AAVAVEKMNG
301: ISLGEDVLYV GRAQKKSERE EELRRKFELE RISRFEKLQG SNLYLKNLDD SVNDEKLKEM FSEYGNVTSC KVMMNSEGVS RGFGFVAYSC PEEALRAMNE
401: MNGKMIGRKP LYIALAQRKE ERRSHLQTLF SHMRPNGTMS PMASPMPGFH HHPPGGAMAG PHHPMYVGQN GQGLVPSQPM GYGYQLQFMP GVRPGSGPSN
501: FMMPYPLQRQ NQPGPRVGFR RGATNMQQHF QQQQMMQQNA SPGMRYMGGP GNRRNGMEGT APQGIIPLPL DASAISHNAS QNPQKPPLLP ISKLMSALAL
601: ANPASHPQML GEQLYPLVEK QEPVHTAKVT GMLLEMDQAE ILHLLESPEA LKAKVSEALD VLRLSANPPA VSSVDDQFAP SATE

Best Arabidopsis Sequence Match ( AT1G71770.2 )
(BLAST)

001: MAAAVASGIA PTTAMVDQVI PNQPTVAAAA PPPFPAVSQV AAVAAAAAAA EALQTHPNSS LYVGDLDPSV NESHLLDLFN QVAPVHNLRV CRDLTHRSLG
101: YAYVNFANPE DASRAMESLN YAPIRDRPIR IMLSNRDPST RLSGKGNVFI KNLDASIDNK ALYETFSSFG TILSCKVAMD VVGRSKGYGF VQFEKEETAQ
201: AAIDKLNGML LNDKQVFVGH FVRRQDRARS ESGAVPSFTN VYVKNLPKEI TDDELKKTFG KYGDISSAVV MKDQSGNSRS FGFVNFVSPE AAAVAVEKMN
301: GISLGEDVLY VGRAQKKSDR EEELRRKFEQ ERISRFEKLQ GSNLYLKNLD DSVNDEKLKE MFSEYGNVTS CKVMMNSQGL SRGFGFVAYS NPEEALLAMK
401: EMNGKMIGRK PLYVALAQRK EERQAHLQSL FTQIRSPGTM SPVPSPMSGF HHHPPGGPMS GPHHPMFIGH NGQGLVPSQP MGYGYQVQFM PGMRPGAGPP
501: NFMMPFPLQR QTQPGPRVGF RRGANNMQQQ FQQQQMLQQN ASRFMGGAGN RRNGMEASAP QGIIPLPLNA SANSHNAPQR SHKPTPLTIS KLASDLALAS
601: PDKHPRMLGD HLYPLVEQQE PANAAKVTGM LLEMDQAEIL HLLESPEALK AKVSEALDVL RRSADPAAVS SVDDQFALSS SE

Arabidopsis Description

PAB5Polyadenylate-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q05196]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.