Factsheet for Bra039603.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43894	Canola	nucleus	100.0	100.0
Bra037217.1-P	Field mustard	nucleus	94.23	90.03
AT2G18510.1	Thale cress	nucleus	88.19	88.43
VIT_04s0023g01470.t01	Wine grape	nucleus	73.63	71.85
PGSC0003DMT400023075	Potato	nucleus	71.15	71.35
Solyc03g118800.2.1	Tomato	nucleus	70.88	70.88
KRH36396	Soybean	endoplasmic reticulum	70.88	70.68
KRH27525	Soybean	nucleus	70.6	70.6
PGSC0003DMT400014744	Potato	nucleus	70.33	70.33
Os10t0457000-01	Rice	nucleus	68.41	70.14
GSMUA_Achr5P20140_001	Banana	nucleus	69.78	69.4
EER94133	Sorghum	nucleus	66.76	68.45
Zm00001d014094_P002	Maize	extracellular, plasma membrane	66.48	67.79
Zm00001d032807_P001	Maize	nucleus	66.21	67.13
HORVU1Hr1G038240.1	Barley	nucleus	67.03	66.3
TraesCS1D01G142300.1	Wheat	nucleus	66.76	66.03
TraesCS1B01G160900.1	Wheat	nucleus	66.48	65.76
TraesCS1A01G143500.1	Wheat	nucleus	66.21	65.49
Bra034301.1-P	Field mustard	mitochondrion	6.87	22.52
Bra027446.1-P	Field mustard	cytosol	15.66	17.81
Bra034603.1-P	Field mustard	cytosol, plastid	27.47	16.16
Bra011488.1-P	Field mustard	cytosol, plastid	27.2	16.15
Bra032172.1-P	Field mustard	cytosol	28.57	16.15
Bra013104.1-P	Field mustard	cytosol	27.2	16.07
Bra037962.1-P	Field mustard	nucleus	18.41	15.91
Bra010418.1-P	Field mustard	nucleus	16.48	15.87
Bra039195.1-P	Field mustard	cytosol, nucleus, plastid	27.2	15.81
Bra030985.1-P	Field mustard	mitochondrion, nucleus	17.86	15.55
Bra030908.1-P	Field mustard	nucleus	17.86	15.51
Bra015220.1-P	Field mustard	cytosol	24.45	15.4
Bra019078.1-P	Field mustard	nucleus	17.31	15.29
Bra018797.1-P	Field mustard	cytosol	27.2	15.16
Bra026387.1-P	Field mustard	nucleus	16.21	15.01
Bra002230.1-P	Field mustard	nucleus	17.03	14.8
Bra016371.1-P	Field mustard	plastid	24.18	14.79
Bra003915.1-P	Field mustard	cytosol	25.82	14.51
Bra031774.1-P	Field mustard	nucleus	15.66	14.47
Bra002947.1-P	Field mustard	nucleus	15.66	14.39
Bra006502.1-P	Field mustard	nucleus	16.76	14.19
Bra040663.1-P	Field mustard	nucleus	14.29	13.98
Bra018813.1-P	Field mustard	mitochondrion, nucleus	14.84	13.85
Bra007984.1-P	Field mustard	plastid	23.35	13.62
Bra016118.1-P	Field mustard	plastid	25.27	13.45
Bra022389.1-P	Field mustard	nucleus	15.66	13.38
Bra037538.1-P	Field mustard	nucleus	14.29	12.9
Bra001735.1-P	Field mustard	nucleus	14.56	12.86
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	17.31	12.07
Bra022413.1-P	Field mustard	cytosol	12.09	9.87
Bra039841.1-P	Field mustard	cytosol	5.77	9.86
Bra014216.1-P	Field mustard	nucleus	14.84	9.44

Protein Annotations

MapMan:16.4.1.2.4.4	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra039603	EnsemblPlants:Bra039603.1	EnsemblPlants:Bra039603.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M4FET1
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44799	InterPro:RBD_domain_sf	InterPro:RRM_dom
InterPro:SF3B4_RRM1	InterPro:SF3B4_RRM2	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002541100	SEG:seg

Description

AT2G18510 (E=6e-127) emb2444 | emb2444 (embryo defective 2444); RNA binding / nucleic acid binding / nucleotide binding

Coordinates

chrA07:+:1348103..1350653

Molecular Weight (calculated)

39942.5 Da

IEP (calculated)

7.344

GRAVY (calculated)

-0.694

Length

364 amino acids

Sequence
(BLAST)

001: MTTRIAPGVG ANLLGQHSAE RNQEATVYVG GLEPQLSEEL LWELFVQAGP LVNVYVPKDR VTGLHLGYEF IEFRSEEDAD YAIKVLNMIK IHGKPIRVNK
101: VSQDKKSLDV GANLFIGNLD PDVDEKILYD TFSAFGGIAS NPKIMRDPDT GNSRGFGFIS YDSFDASDAA IESMTGQYLC NRQITVSYAY KKDTKGERHG
201: TPAERLLAAT NPISQKSRPH TLFASGPPTA PQANGFPRPF ANGGMQPVPI PGPRPTPPPP PPQVYQTQPQ SWQSQPHQQQ HGLAVPPPMQ YHPPQGMPPP
301: PPPQFLHHQQ GFGGPRPPPP PQAMGMHQHG WPPQHMQQGG PPPPQQPMHY HHPMSMPPPP PHQG

Best Arabidopsis Sequence Match ( AT2G18510.1 )
(BLAST)

001: MTTRIAPGVG ANLLGQHSAE RNQDATVYVG GLDAQLSEEL LWELFVQAGP VVNVYVPKDR VTNLHQNYGF IEYRSEEDAD YAIKVLNMIK LHGKPIRVNK
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIAS NPKIMRDPDT GNSRGFGFIS YDSFEASDAA IESMTGQYLS NRQITVSYAY KKDTKGERHG
201: TPAERLLAAT NPTAQKSRPH TLFAMGPPSS APQVNGLPRP FANGSMQPVP IPAPRQPPPP PPQVYQTQPP SWPSQPQQHS MVPPPMQFRP PQGMPPPPPP
301: QFLNHQQGFG GPRPPPPPQA MGMHQHGGWP PQHMQQQGGP PQQQQPPYQH HHMSMPPPPP HQG

Arabidopsis Description

emb2444Emb2444 [Source:UniProtKB/TrEMBL;Acc:A0A178VZK5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.