Factsheet for Bra030985.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY63384	Canola	mitochondrion, nucleus	99.76	99.76
AT1G17370.1	Thale cress	mitochondrion, nucleus	93.78	93.56
VIT_09s0002g00880.t01	Wine grape	mitochondrion, nucleus	82.06	81.67
KRH06218	Soybean	nucleus	80.86	81.25
KRH47641	Soybean	nucleus	81.34	80.57
Bra037962.1-P	Field mustard	nucleus	77.27	76.72
Bra030908.1-P	Field mustard	nucleus	76.79	76.61
CDX81822	Canola	mitochondrion, nucleus	99.04	75.96
GSMUA_Achr6P11660_001	Banana	mitochondrion	76.56	75.65
GSMUA_Achr10P...	Banana	mitochondrion	75.6	74.35
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	75.6	72.81
Os11t0620100-01	Rice	nucleus	73.21	69.39
TraesCS4B01G148600.1	Wheat	nucleus	73.21	68.76
GSMUA_Achr11P...	Banana	nucleus	72.97	68.69
TraesCS4D01G150600.2	Wheat	nucleus	72.49	67.48
TraesCS4A01G150000.1	Wheat	mitochondrion	72.01	67.19
Zm00001d048824_P004	Maize	nucleus	70.81	66.22
Zm00001d026528_P001	Maize	plastid	34.69	65.91
Os07t0615400-01	Rice	nucleus	67.22	65.81
EES08860	Sorghum	nucleus	69.14	65.53
HORVU4Hr1G033990.7	Barley	golgi, nucleus	68.18	64.92
TraesCS2D01G176700.1	Wheat	nucleus	65.31	64.08
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	75.6	63.71
TraesCS2A01G169100.1	Wheat	nucleus	65.07	63.55
TraesCS2B01G195400.1	Wheat	nucleus	65.07	63.4
Zm00001d026522_P001	Maize	nucleus	32.06	54.92
HORVU2Hr1G031260.2	Barley	nucleus, plastid	65.07	54.73
Bra027446.1-P	Field mustard	cytosol	21.53	28.12
Bra002947.1-P	Field mustard	nucleus	26.08	27.53
Bra031774.1-P	Field mustard	nucleus	25.84	27.41
Bra001735.1-P	Field mustard	nucleus	26.55	26.94
Bra018813.1-P	Field mustard	mitochondrion, nucleus	25.12	26.92
Bra022389.1-P	Field mustard	nucleus	27.27	26.76
Bra010418.1-P	Field mustard	nucleus	22.73	25.13
Bra019078.1-P	Field mustard	nucleus	24.64	25.0
Bra026387.1-P	Field mustard	nucleus	23.45	24.94
Bra040663.1-P	Field mustard	nucleus	22.01	24.73
Bra037538.1-P	Field mustard	nucleus	23.21	24.07
Bra002230.1-P	Field mustard	nucleus	22.97	22.91
Bra006502.1-P	Field mustard	nucleus	22.25	21.63
Bra034301.1-P	Field mustard	mitochondrion	5.02	18.92
Bra039603.1-P	Field mustard	nucleus	15.55	17.86
Bra037217.1-P	Field mustard	nucleus	16.27	17.85
Bra014216.1-P	Field mustard	nucleus	22.97	16.78
Bra011488.1-P	Field mustard	cytosol, plastid	23.21	15.82
Bra034603.1-P	Field mustard	cytosol, plastid	22.97	15.51
Bra032172.1-P	Field mustard	cytosol	23.45	15.22
Bra018797.1-P	Field mustard	cytosol	23.68	15.16
Bra013104.1-P	Field mustard	cytosol	21.77	14.77
Bra039195.1-P	Field mustard	cytosol, nucleus, plastid	22.01	14.7
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	17.7	14.18
Bra015220.1-P	Field mustard	cytosol	19.14	13.84
Bra016371.1-P	Field mustard	plastid	19.38	13.61
Bra003915.1-P	Field mustard	cytosol	19.62	12.65
Bra022413.1-P	Field mustard	cytosol	13.16	12.33
Bra016118.1-P	Field mustard	plastid	20.1	12.28
Bra007984.1-P	Field mustard	plastid	18.18	12.18
Bra039841.1-P	Field mustard	cytosol	2.87	5.63

Protein Annotations

MapMan:16.9.3	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra030985	EnsemblPlants:Bra030985.1	EnsemblPlants:Bra030985.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
UniProt:M4EQB4	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44160	PANTHER:PTHR44160:SF1
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002542B58	SEG:seg

Description

AT1G17370 (E=9e-207) UBP1B | UBP1B (oligouridylate binding protein 1B); mRNA 3'-UTR binding

Coordinates

chrA09:+:33104175..33106945

Molecular Weight (calculated)

45711.9 Da

IEP (calculated)

7.339

GRAVY (calculated)

-0.442

Length

418 amino acids

Sequence
(BLAST)

001: MQRLKQQQQQ QAMMQQALMQ QQSLYHPGLL TAPQIEPIPS GNLPPGFDPT SCRSVYVGNV HIQVTEPLLQ EVFASTGPVE SCKLIRKEQS SYGFVHYFDR
101: RSAGLAILSL NGRHLFGQPI KVNWAYASGQ REDTSAHFNI FVGDLSPEVT DAMLFSCFSV YPSCSDARVM WDQKTGRSRG FGFVSFRNQQ DAQTAIDEAG
201: GKWLGTRQIR CNWATKGATS GEDKISSDSK SVVELTSGVS EDGKDTCNGD APENNAQYTT VYVGNLGPEV SQVDLHRHFY SLGAGVIEEV RIQRDKGFGF
301: VRYSTHVEAA LAIQLGNTHS YLGGRQMKCS WGSKPTPPGT ASNPLPPPGP APIPGFSASD LLAYERQLAM SKMAGMNPMM HHPQGQHALK QAAMGATGSN
401: QAIYDGGFQN AQQLMYYQ

Best Arabidopsis Sequence Match ( AT1G17370.1 )
(BLAST)

001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ

Arabidopsis Description

UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.