Factsheet for GSMUA_Achr10P17470_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 5
plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr1P25720_001
GSMUA_Achr4P00500_001
GSMUA_Achr6P02720_001
GSMUA_Achr7P03500_001
GSMUA_Achr7P17990_001
GSMUA_Achr7P20990_001
GSMUA_Achr9P30650_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14100.1	GSMUA_Achr11P...	AT1G16500.1	21798944
AT3G14100.1	GSMUA_Achr1P25720_001	AT1G16500.1	21798944
AT3G14100.1	GSMUA_Achr7P03500_001	AT1G16500.1	21798944
AT3G14100.1	GSMUA_Achr9P30650_001	AT1G16500.1	21798944
AT3G14100.1	GSMUA_AchrUn_...	AT1G16500.1	21798944
AT3G14100.1	GSMUA_Achr4P00500_001	AT3G47620.1	21798944
AT3G14100.1	GSMUA_Achr6P02720_001	AT3G47620.1	21798944
AT3G14100.1	GSMUA_Achr7P17990_001	AT3G47620.1	21798944
AT3G14100.1	GSMUA_Achr7P20990_001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P11660_001	Banana	mitochondrion	89.88	90.31
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	85.88	84.1
VIT_11s0016g00700.t01	Wine grape	mitochondrion, nucleus	80.47	81.04
VIT_09s0002g00880.t01	Wine grape	mitochondrion, nucleus	80.0	80.95
GSMUA_Achr11P...	Banana	nucleus	84.47	80.86
KRH47641	Soybean	nucleus	80.24	80.81
PGSC0003DMT400012431	Potato	mitochondrion, nucleus	79.06	80.58
Solyc06g063000.2.1	Tomato	nucleus	78.59	80.1
KRH06218	Soybean	nucleus	78.35	80.05
PGSC0003DMT400058919	Potato	nucleus	75.53	76.98
Solyc03g122180.2.1	Tomato	nucleus	75.53	76.98
Bra030985.1-P	Field mustard	mitochondrion, nucleus	74.35	75.6
CDY63384	Canola	mitochondrion, nucleus	74.35	75.6
AT1G17370.1	Thale cress	mitochondrion, nucleus	74.35	75.42
KRH19347	Soybean	mitochondrion, nucleus	72.47	75.12
KRH02581	Soybean	mitochondrion	72.71	74.82
Solyc07g042180.2.1	Tomato	nucleus	69.65	74.37
PGSC0003DMT400066072	Potato	nucleus	71.06	73.66
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	85.88	73.59
AT3G14100.1	Thale cress	nucleus	73.18	72.83
Solyc12g009230.1.1	Tomato	mitochondrion, nucleus	68.71	72.82
PGSC0003DMT400007513	Potato	mitochondrion, nucleus	68.71	72.82
Zm00001d026528_P001	Maize	plastid	37.65	72.73
Os07t0615400-01	Rice	nucleus	72.94	72.6
Os11t0620100-01	Rice	nucleus	74.35	71.66
Bra030908.1-P	Field mustard	nucleus	70.35	71.36
CDY02486	Canola	nucleus	70.35	71.19
CDY61476	Canola	nucleus	69.88	70.88
CDY51403	Canola	nucleus	69.88	70.71
TraesCS4B01G148600.1	Wheat	nucleus	73.88	70.56
Zm00001d048824_P004	Maize	nucleus	74.12	70.47
Bra037962.1-P	Field mustard	nucleus	69.65	70.31
GSMUA_Achr9P14120_001	Banana	nucleus	66.82	69.95
CDY33092	Canola	nucleus	69.65	69.65
TraesCS4D01G150600.2	Wheat	nucleus	73.18	69.27
TraesCS2D01G176700.1	Wheat	nucleus	69.18	69.01
TraesCS4A01G150000.1	Wheat	mitochondrion	72.71	68.97
EES08860	Sorghum	nucleus	71.53	68.93
TraesCS2B01G195400.1	Wheat	nucleus	69.41	68.76
TraesCS2A01G169100.1	Wheat	nucleus	69.18	68.69
HORVU4Hr1G033990.7	Barley	golgi, nucleus	69.18	66.97
AT1G54080.2	Thale cress	nucleus	67.29	66.51
VIT_04s0043g01000.t01	Wine grape	cytosol, extracellular, mitochondrion	20.47	59.59
HORVU2Hr1G031260.2	Barley	nucleus, plastid	69.41	59.36
CDX81822	Canola	mitochondrion, nucleus	74.35	57.98
Zm00001d026522_P001	Maize	nucleus	32.0	55.74
GSMUA_Achr9P15210_001	Banana	nucleus	23.06	31.41
GSMUA_Achr3P06840_001	Banana	nucleus	22.82	31.09
GSMUA_Achr6P10190_001	Banana	nucleus	22.35	30.35
GSMUA_Achr9P24980_001	Banana	cytosol	23.06	29.61
GSMUA_Achr6P29410_001	Banana	nucleus	22.59	29.27
GSMUA_Achr10P...	Banana	nucleus	21.18	28.66
GSMUA_Achr8P31320_001	Banana	nucleus	25.18	26.75
GSMUA_Achr10P...	Banana	nucleus	26.12	25.58
GSMUA_Achr3P01720_001	Banana	mitochondrion	23.53	24.81
GSMUA_Achr8P03580_001	Banana	cytosol, mitochondrion, nucleus	23.06	24.08
GSMUA_Achr6P09470_001	Banana	nucleus	7.53	21.77
GSMUA_Achr5P20140_001	Banana	nucleus	17.41	20.22
GSMUA_Achr4P00840_001	Banana	cytosol	20.47	17.98
GSMUA_Achr4P20270_001	Banana	cytosol	21.88	14.46
GSMUA_Achr9P00990_001	Banana	cytosol	22.12	14.44
GSMUA_AchrUn_...	Banana	cytosol	21.88	14.26
GSMUA_Achr4P09890_001	Banana	cytosol	21.65	14.11
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	19.06	12.5
GSMUA_Achr5P24940_001	Banana	plastid	19.53	12.46
GSMUA_Achr9P10860_001	Banana	cytosol	20.94	12.45
GSMUA_Achr7P05430_001	Banana	nucleus	21.18	9.96

Protein Annotations

MapMan:16.9.3	Gene3D:3.30.70.330	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	EnsemblPlantsGene:GSMUA_Achr10G17470_001	EnsemblPlants:GSMUA_Achr10P17470_001	EnsemblPlants:GSMUA_Achr10T17470_001	InterPro:IPR000504	InterPro:IPR012677
UniProt:M0RJ22	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44160	PANTHER:PTHR44160:SF2
InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928
UniParc:UPI000295BF2A	SEG:seg	:	:	:	:

Description

Putative Nucleolysin TIAR [Source:GMGC_GENE;Acc:GSMUA_Achr10G17470_001]

Coordinates

chr10:-:24658756..24667708

Molecular Weight (calculated)

46466.8 Da

IEP (calculated)

7.233

GRAVY (calculated)

-0.407

Length

425 amino acids

Sequence
(BLAST)

001: MQQLRLKQQQ ALMQQALLVQ QQQQQQQQSL YPHPGLLAAP QIEPILSGNL PPGFDPSTCR SVYVGNVHLQ VTEALLQEVF QSTGPVEGCK LIRKEKSSFG
101: FVDYYDRRSA ALAIVALNGR HLFGQPIKVN WAYASGQRED TSGQYNIFVG DLSPEVTDAT LFACFSVYPS CSDARVMWDQ KTGRSRGFGF VSFRNQQEAQ
201: SAINDLSGKW LGSRQIRCNW ATKGANANED KQNLESKNAE LTNESAEDGQ EYTNDDGPEN NPQYTTVYVG NLAHEVTQVD LHRYFHALGA GVIEDVRIQR
301: DKGFGFVRYS SHSEAALAIQ MGNGRIFCGK PIKCSWGNKP TAPGTTSTPL PPPLAAPFPG FSATDLVGYD RVMALSKMGA NQALIHAQGQ HALKPAAMGM
401: GAGASQAIYN GGFQNVGAAQ QLMYY

Best Arabidopsis Sequence Match ( AT1G17370.1 )
(BLAST)

001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ

Arabidopsis Description

UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.