Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G54080.2 | Thale cress | nucleus | 84.07 | 83.49 |
| AT1G17370.1 | Thale cress | mitochondrion, nucleus | 81.03 | 82.58 |
| PGSC0003DMT400012431 | Potato | mitochondrion, nucleus | 80.56 | 82.49 |
| Solyc06g063000.2.1 | Tomato | nucleus | 79.63 | 81.53 |
| PGSC0003DMT400058919 | Potato | nucleus | 76.58 | 78.42 |
| Solyc03g122180.2.1 | Tomato | nucleus | 76.35 | 78.18 |
| GSMUA_Achr6P11660_001 | Banana | mitochondrion | 74.24 | 74.94 |
| GSMUA_Achr10P... | Banana | mitochondrion | 72.83 | 73.18 |
| GSMUA_Achr3P02150_001 | Banana | mitochondrion, nucleus | 73.07 | 71.89 |
| GSMUA_Achr11P... | Banana | nucleus | 71.43 | 68.69 |
| TraesCS4B01G148600.1 | Wheat | nucleus | 71.43 | 68.54 |
| Os11t0620100-01 | Rice | nucleus | 70.02 | 67.8 |
| TraesCS4D01G150600.2 | Wheat | nucleus | 70.49 | 67.04 |
| Zm00001d048824_P004 | Maize | nucleus | 70.02 | 66.89 |
| Os07t0615400-01 | Rice | nucleus | 66.74 | 66.74 |
| TraesCS4A01G150000.1 | Wheat | mitochondrion | 70.02 | 66.74 |
| Zm00001d026528_P001 | Maize | plastid | 33.96 | 65.91 |
| TraesCS2D01G176700.1 | Wheat | nucleus | 65.34 | 65.49 |
| EES08860 | Sorghum | nucleus | 67.45 | 65.31 |
| TraesCS2B01G195400.1 | Wheat | nucleus | 65.11 | 64.8 |
| TraesCS2A01G169100.1 | Wheat | nucleus | 64.87 | 64.72 |
| HORVU4Hr1G033990.7 | Barley | golgi, nucleus | 66.51 | 64.69 |
| GSMUA_Achr2P21780_001 | Banana | nucleus, plastid | 72.83 | 62.7 |
| VIT_04s0043g01000.t01 | Wine grape | cytosol, extracellular, mitochondrion | 21.08 | 61.64 |
| Zm00001d026522_P001 | Maize | nucleus | 32.32 | 56.56 |
| HORVU2Hr1G031260.2 | Barley | nucleus, plastid | 65.11 | 55.94 |
| AT4G27000.1 | Thale cress | nucleus | 26.23 | 26.99 |
| AT5G54900.1 | Thale cress | nucleus | 23.18 | 25.58 |
| AT3G19130.1 | Thale cress | nucleus | 25.29 | 24.83 |
| AT1G11650.2 | Thale cress | nucleus | 23.42 | 24.69 |
| AT1G49600.3 | Thale cress | nucleus | 25.76 | 24.44 |
| AT1G47500.1 | Thale cress | nucleus | 23.42 | 23.04 |
| AT1G47490.1 | Thale cress | nucleus | 23.18 | 22.92 |
| AT5G19350.1 | Thale cress | cytosol | 22.25 | 22.35 |
| AT2G18510.1 | Thale cress | nucleus | 16.86 | 19.83 |
| AT1G34140.1 | Thale cress | nucleus | 15.22 | 15.97 |
| AT1G49760.1 | Thale cress | cytosol | 24.59 | 15.65 |
| AT4G34110.1 | Thale cress | cytosol | 22.95 | 15.58 |
| AT2G23350.1 | Thale cress | nucleus | 24.12 | 15.56 |
| AT3G16380.1 | Thale cress | nucleus | 18.27 | 14.53 |
| AT2G36660.1 | Thale cress | cytosol, plastid | 20.61 | 14.45 |
| AT1G22760.1 | Thale cress | nucleus, plastid | 20.37 | 13.18 |
| AT1G71770.1 | Thale cress | cytosol, plastid | 20.14 | 12.61 |
Protein Annotations
| MapMan:16.9.3 | Gene3D:3.30.70.330 | EntrezGene:820626 | ProteinID:AEE75468.1 | ArrayExpress:AT3G14100 | EnsemblPlantsGene:AT3G14100 |
| RefSeq:AT3G14100 | TAIR:AT3G14100 | RefSeq:AT3G14100-TAIR-G | EnsemblPlants:AT3G14100.1 | TAIR:AT3G14100.1 | EMBL:AY087692 |
| EMBL:AY139775 | Unigene:At.22594 | ProteinID:BAB02974.1 | EMBL:BT004540 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_188026.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50102 | PANTHER:PTHR44160 | PANTHER:PTHR44160:SF2 | UniProt:Q9LJH8 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000000C39C | SEG:seg |
Description
UBP1COligouridylate-binding protein 1C [Source:UniProtKB/Swiss-Prot;Acc:Q9LJH8]
Coordinates
chr3:+:4672916..4676162
Molecular Weight (calculated)
47091.3 Da
IEP (calculated)
7.717
GRAVY (calculated)
-0.523
Length
427 amino acids
Sequence
(BLAST)
(BLAST)
001: MQNPRLKQHQ QQQQQQAMMQ QQALMQQHSL YHPGVLAPPQ LEPVPSGNLP PGFDPSTCRS VYVGNIHTQV TEPLLQEIFT STGPVESSKL IRKDKSSYGF
101: VHYFDRRSAA LAILSLNGRH LFGQPIKVNW AYATGQREDT SSHFNIFVGD LSPEVTDATL YQSFSVFSSC SDARVMWDQK TGRSRGFGFV SFRNQQDAQT
201: AINEMNGKWL SSRQIRCNWA TKGATSGDDK LSSDGKSVVE LTTGSSEDGK ETLNEETPEN NSQFTTVYVG NLAPEVTQLD LHRYFHALGA GVIEEVRVQR
301: DKGFGFVRYN THPEAALAIQ MGNTQPYLFN RQIKCSWGNK PTPPGTASNP LPPPAPAPVP GLSAADLLNY ERQLALSKMA SVNALMHQQG QHPLRQAHGI
401: NAAGATAAMY DGGFQNVAAA QQLMYYQ
101: VHYFDRRSAA LAILSLNGRH LFGQPIKVNW AYATGQREDT SSHFNIFVGD LSPEVTDATL YQSFSVFSSC SDARVMWDQK TGRSRGFGFV SFRNQQDAQT
201: AINEMNGKWL SSRQIRCNWA TKGATSGDDK LSSDGKSVVE LTTGSSEDGK ETLNEETPEN NSQFTTVYVG NLAPEVTQLD LHRYFHALGA GVIEEVRVQR
301: DKGFGFVRYN THPEAALAIQ MGNTQPYLFN RQIKCSWGNK PTPPGTASNP LPPPAPAPVP GLSAADLLNY ERQLALSKMA SVNALMHQQG QHPLRQAHGI
401: NAAGATAAMY DGGFQNVAAA QQLMYYQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.