Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G34110.1 | Thale cress | cytosol | 49.39 | 31.96 |
| AT1G49760.1 | Thale cress | cytosol | 48.65 | 29.51 |
| AT2G23350.1 | Thale cress | nucleus | 47.67 | 29.31 |
| AT1G22760.1 | Thale cress | nucleus, plastid | 46.68 | 28.79 |
| AT1G71770.1 | Thale cress | cytosol, plastid | 47.67 | 28.45 |
| AT3G16380.1 | Thale cress | nucleus | 37.1 | 28.12 |
| AT2G36660.1 | Thale cress | cytosol, plastid | 37.1 | 24.79 |
| AT1G47490.1 | Thale cress | nucleus | 16.95 | 15.97 |
| AT2G18510.1 | Thale cress | nucleus | 14.0 | 15.7 |
| AT1G47500.1 | Thale cress | nucleus | 16.71 | 15.67 |
| AT4G27000.1 | Thale cress | nucleus | 15.72 | 15.42 |
| AT5G54900.1 | Thale cress | nucleus | 14.5 | 15.25 |
| AT3G14100.1 | Thale cress | nucleus | 15.97 | 15.22 |
| AT1G54080.2 | Thale cress | nucleus | 15.72 | 14.88 |
| AT1G11650.2 | Thale cress | nucleus | 14.74 | 14.81 |
| AT3G19130.1 | Thale cress | nucleus | 15.48 | 14.48 |
| AT5G19350.1 | Thale cress | cytosol | 14.74 | 14.12 |
| AT1G17370.1 | Thale cress | mitochondrion, nucleus | 14.5 | 14.08 |
| AT1G49600.3 | Thale cress | nucleus | 13.76 | 12.44 |
Protein Annotations
| MapMan:17.4.2.5 | Gene3D:3.30.70.330 | ArrayExpress:AT1G34140 | EnsemblPlantsGene:AT1G34140 | RefSeq:AT1G34140 | TAIR:AT1G34140 |
| RefSeq:AT1G34140-TAIR-G | EnsemblPlants:AT1G34140.1 | TAIR:AT1G34140.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0006412 | GO:GO:0006417 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | Symbol:PAB1 | PFAM:PF00076 |
| PO:PO:0009005 | PO:PO:0009046 | PFscan:PS50102 | PANTHER:PTHR24012 | PANTHER:PTHR24012:SF620 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00360 | SMART:SM00361 | SUPFAM:SSF54928 | UniParc:UPI0000162F82 |
| SEG:seg | : | : | : | : | : |
Description
PAB1poly(A) binding protein 1 [Source:TAIR;Acc:AT1G34140]
Coordinates
chr1:-:12433356..12434735
Molecular Weight (calculated)
45907.5 Da
IEP (calculated)
9.684
GRAVY (calculated)
-0.394
Length
407 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVLNYCKLK GKPMRIMFSE RDPSNRMSGR GNVFVKNLDE SIDNKQLCDM FSAFGKVLSC KVARDASGVS KGYGFVQFYS DLSVYTACNF HNGTLIRNQH
101: IHVCPFVSRG QWDKSRVFTN VYVKNLVETA TDADLKRLFG EFGEITSAVV MKDGEGKSRR FGFVNFEKAE AAVTAIEKMN GVVVDEKELH VGRAQRKTNR
201: TEDLKAKFEL EKIIRDMKTR KGMNLYVKNL DDSVDNTKLE ELFSEFGTIT SCKVMVHSNG ISKGVGFVEF STSEEASKAM LKMNGKMVGN KPIYVSLAQC
301: KEQHKLHLQT QFNNPPPSPH QQPIFSQVVA PATMLSQQTP LRGYNFQPYS MCGSRMPNSC PPISIPNFMV PQPFRPTLYP PAPLVGLYGS LPQPLLQPNL
401: WNPYRRF
101: IHVCPFVSRG QWDKSRVFTN VYVKNLVETA TDADLKRLFG EFGEITSAVV MKDGEGKSRR FGFVNFEKAE AAVTAIEKMN GVVVDEKELH VGRAQRKTNR
201: TEDLKAKFEL EKIIRDMKTR KGMNLYVKNL DDSVDNTKLE ELFSEFGTIT SCKVMVHSNG ISKGVGFVEF STSEEASKAM LKMNGKMVGN KPIYVSLAQC
301: KEQHKLHLQT QFNNPPPSPH QQPIFSQVVA PATMLSQQTP LRGYNFQPYS MCGSRMPNSC PPISIPNFMV PQPFRPTLYP PAPLVGLYGS LPQPLLQPNL
401: WNPYRRF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.