Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 4
- cytosol 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96344 | Canola | plastid | 85.34 | 85.09 |
| CDX72826 | Canola | plastid | 85.34 | 85.09 |
| Bra016118.1-P | Field mustard | plastid | 85.19 | 84.94 |
| CDY36684 | Canola | plastid | 78.74 | 80.75 |
| Bra003915.1-P | Field mustard | cytosol | 75.37 | 79.32 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 75.07 | 79.01 |
| CDY37935 | Canola | nucleus | 74.93 | 78.49 |
| CDY03685 | Canola | nucleus | 70.23 | 74.49 |
| AT1G22760.1 | Thale cress | nucleus, plastid | 71.41 | 73.79 |
| Bra007984.1-P | Field mustard | plastid | 67.3 | 73.56 |
| PGSC0003DMT400064531 | Potato | cytosol | 42.23 | 54.14 |
| VIT_18s0001g02490.t01 | Wine grape | plastid | 51.32 | 53.11 |
| KRG91724 | Soybean | cytosol | 50.73 | 53.07 |
| AT4G34110.1 | Thale cress | cytosol | 47.51 | 51.51 |
| KRH08608 | Soybean | endoplasmic reticulum | 47.8 | 48.95 |
| GSMUA_Achr5P24940_001 | Banana | plastid | 47.8 | 48.95 |
| AT1G49760.1 | Thale cress | cytosol | 47.65 | 48.44 |
| KRH70233 | Soybean | cytosol | 44.43 | 48.17 |
| AT1G34140.1 | Thale cress | nucleus | 28.45 | 47.67 |
| AT2G23350.1 | Thale cress | nucleus | 45.6 | 46.98 |
| AT2G36660.1 | Thale cress | cytosol, plastid | 32.4 | 36.29 |
| AT3G16380.1 | Thale cress | nucleus | 27.13 | 34.45 |
| AT2G18510.1 | Thale cress | nucleus | 12.76 | 23.97 |
| AT1G47490.1 | Thale cress | nucleus | 14.08 | 22.22 |
| AT1G47500.1 | Thale cress | nucleus | 14.08 | 22.12 |
| AT4G27000.1 | Thale cress | nucleus | 13.05 | 21.45 |
| AT1G11650.2 | Thale cress | nucleus | 12.61 | 21.23 |
| AT5G19350.1 | Thale cress | cytosol | 13.2 | 21.18 |
| AT1G17370.1 | Thale cress | mitochondrion, nucleus | 12.9 | 21.0 |
| AT5G54900.1 | Thale cress | nucleus | 11.88 | 20.93 |
| AT3G19130.1 | Thale cress | nucleus | 13.34 | 20.92 |
| AT3G14100.1 | Thale cress | nucleus | 12.61 | 20.14 |
| AT1G49600.3 | Thale cress | nucleus | 12.76 | 19.33 |
| AT1G54080.2 | Thale cress | nucleus | 11.88 | 18.84 |
Protein Annotations
| Gene3D:1.10.1900.10 | MapMan:17.4.2.5 | Gene3D:3.30.70.330 | EntrezGene:843507 | UniProt:A0A178WJE2 | ProteinID:AAA32832.1 |
| ProteinID:AAF43230.1 | ProteinID:AEE35230.1 | ProteinID:AEE35231.1 | ArrayExpress:AT1G71770 | EnsemblPlantsGene:AT1G71770 | RefSeq:AT1G71770 |
| TAIR:AT1G71770 | RefSeq:AT1G71770-TAIR-G | EnsemblPlants:AT1G71770.1 | TAIR:AT1G71770.1 | Unigene:At.52482 | EMBL:BX818355 |
| ncoils:Coil | GO:GO:0000289 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0006139 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0006417 | GO:GO:0008143 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR000504 |
| InterPro:IPR002004 | InterPro:IPR012677 | RefSeq:NP_001185373.1 | RefSeq:NP_177322.2 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:OAP17593.1 |
| Symbol:PAB5 | InterPro:PABP-dom | InterPro:PABP_1234 | InterPro:PABP_HYD | PFAM:PF00076 | PFAM:PF00658 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0009071 | PO:PO:0020003 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50102 | PFscan:PS51309 | PANTHER:PTHR24012 | PANTHER:PTHR24012:SF620 |
| UniProt:Q05196 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00360 | SMART:SM00361 |
| SMART:SM00517 | SUPFAM:SSF54928 | SUPFAM:SSF63570 | TIGRFAMs:TIGR01628 | UniParc:UPI0001E92AB2 | SEG:seg |
Description
PAB5Polyadenylate-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q05196]
Coordinates
chr1:-:26990525..26994259
Molecular Weight (calculated)
74426.9 Da
IEP (calculated)
8.662
GRAVY (calculated)
-0.393
Length
682 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAVASGIA PTTAMVDQVI PNQPTVAAAA PPPFPAVSQV AAVAAAAAAA EALQTHPNSS LYVGDLDPSV NESHLLDLFN QVAPVHNLRV CRDLTHRSLG
101: YAYVNFANPE DASRAMESLN YAPIRDRPIR IMLSNRDPST RLSGKGNVFI KNLDASIDNK ALYETFSSFG TILSCKVAMD VVGRSKGYGF VQFEKEETAQ
201: AAIDKLNGML LNDKQVFVGH FVRRQDRARS ESGAVPSFTN VYVKNLPKEI TDDELKKTFG KYGDISSAVV MKDQSGNSRS FGFVNFVSPE AAAVAVEKMN
301: GISLGEDVLY VGRAQKKSDR EEELRRKFEQ ERISRFEKLQ GSNLYLKNLD DSVNDEKLKE MFSEYGNVTS CKVMMNSQGL SRGFGFVAYS NPEEALLAMK
401: EMNGKMIGRK PLYVALAQRK EERQAHLQSL FTQIRSPGTM SPVPSPMSGF HHHPPGGPMS GPHHPMFIGH NGQGLVPSQP MGYGYQVQFM PGMRPGAGPP
501: NFMMPFPLQR QTQPGPRVGF RRGANNMQQQ FQQQQMLQQN ASRFMGGAGN RRNGMEASAP QGIIPLPLNA SANSHNAPQR SHKPTPLTIS KLASDLALAS
601: PDKHPRMLGD HLYPLVEQQE PANAAKVTGM LLEMDQAEIL HLLESPEALK AKVSEALDVL RRSADPAAVS SVDDQFALSS SE
101: YAYVNFANPE DASRAMESLN YAPIRDRPIR IMLSNRDPST RLSGKGNVFI KNLDASIDNK ALYETFSSFG TILSCKVAMD VVGRSKGYGF VQFEKEETAQ
201: AAIDKLNGML LNDKQVFVGH FVRRQDRARS ESGAVPSFTN VYVKNLPKEI TDDELKKTFG KYGDISSAVV MKDQSGNSRS FGFVNFVSPE AAAVAVEKMN
301: GISLGEDVLY VGRAQKKSDR EEELRRKFEQ ERISRFEKLQ GSNLYLKNLD DSVNDEKLKE MFSEYGNVTS CKVMMNSQGL SRGFGFVAYS NPEEALLAMK
401: EMNGKMIGRK PLYVALAQRK EERQAHLQSL FTQIRSPGTM SPVPSPMSGF HHHPPGGPMS GPHHPMFIGH NGQGLVPSQP MGYGYQVQFM PGMRPGAGPP
501: NFMMPFPLQR QTQPGPRVGF RRGANNMQQQ FQQQQMLQQN ASRFMGGAGN RRNGMEASAP QGIIPLPLNA SANSHNAPQR SHKPTPLTIS KLASDLALAS
601: PDKHPRMLGD HLYPLVEQQE PANAAKVTGM LLEMDQAEIL HLLESPEALK AKVSEALDVL RRSADPAAVS SVDDQFALSS SE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.