Factsheet for VIT_18s0001g02490.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_16s0098g00600.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22760.1	VIT_16s0098g00600.t01	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91724	Soybean	cytosol	72.69	73.47
PGSC0003DMT400064531	Potato	cytosol	57.36	71.05
KRH70233	Soybean	cytosol	62.97	65.98
KRH08608	Soybean	endoplasmic reticulum	66.16	65.47
VIT_18s0001g10170.t01	Wine grape	cytosol	61.61	63.44
GSMUA_Achr5P24940_001	Banana	plastid	63.43	62.76
VIT_18s0001g10210.t01	Wine grape	cytosol	5.92	61.9
VIT_18s0001g10220.t01	Wine grape	cytosol	9.26	61.0
VIT_07s0031g00210.t01	Wine grape	cytosol	59.18	59.63
Bra016371.1-P	Field mustard	plastid	49.92	55.29
CDY41472	Canola	cytosol, plastid	52.05	53.51
AT1G22760.1	Thale cress	nucleus, plastid	53.11	53.03
VIT_18s0001g10190.t01	Wine grape	cytosol, mitochondrion	9.86	52.0
CDX68303	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	50.83	51.7
Bra003915.1-P	Field mustard	cytosol	50.68	51.54
AT1G71770.1	Thale cress	cytosol, plastid	53.11	51.32
Bra016118.1-P	Field mustard	plastid	53.26	51.32
CDX72826	Canola	plastid	53.26	51.32
CDX96344	Canola	plastid	53.26	51.32
CDY36684	Canola	plastid	51.59	51.13
CDY03685	Canola	nucleus	49.32	50.54
CDY37935	Canola	nucleus	49.92	50.54
Bra007984.1-P	Field mustard	plastid	47.65	50.32
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	57.51	48.16
VIT_08s0007g04380.t01	Wine grape	cytosol	41.12	42.74
VIT_09s0002g03160.t01	Wine grape	cytosol, nucleus, plastid, vacuole	30.65	42.44
VIT_04s0023g01470.t01	Wine grape	nucleus	15.48	27.35
VIT_03s0063g00850.t01	Wine grape	nucleus	16.09	25.6
VIT_18s0001g11080.t01	Wine grape	nucleus	15.78	24.88
VIT_06s0004g02040.t01	Wine grape	nucleus	16.39	24.27
VIT_04s0008g02930.t01	Wine grape	nucleus	13.35	22.17
VIT_09s0002g00880.t01	Wine grape	mitochondrion, nucleus	13.96	21.9
VIT_19s0090g00280.t01	Wine grape	nucleus	14.26	20.3
VIT_11s0016g00700.t01	Wine grape	mitochondrion, nucleus	12.9	20.14
VIT_04s0043g01000.t01	Wine grape	cytosol, extracellular, mitochondrion	3.49	15.75

Protein Annotations

Gene3D:1.10.1900.10	EntrezGene:100263065	wikigene:100263065	MapMan:17.4.2.5	Gene3D:3.30.70.330	ProteinID:CCB52339
ProteinID:CCB52339.1	ncoils:Coil	UniProt:F6HJE0	EMBL:FN595772	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	EntrezGene:LOC100263065	wikigene:LOC100263065	InterPro:Nucleotide-bd_a/b_plait_sf
InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFscan:PS50102
PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF349	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk
SMART:SM00360	SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628
UniParc:UPI00015CD18C	ArrayExpress:VIT_18s0001g02490	EnsemblPlantsGene:VIT_18s0001g02490	EnsemblPlants:VIT_18s0001g02490.t01	unigene:Vvi.20325	RefSeq:XP_002263507
RefSeq:XP_002263507.2	RefSeq:XP_010645822.2	SEG:seg	:	:	:

Description

Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:F6HJE0]

Coordinates

chr18_random:+:2785205..2790286

Molecular Weight (calculated)

72102.2 Da

IEP (calculated)

9.360

GRAVY (calculated)

-0.387

Length

659 amino acids

Sequence
(BLAST)

001: MAAATQSPAV QTPQSLSPVA VQQSTAMTGH TAAAGFANAS LYVGDLDTAI GEGQLYDLFQ QVAPVLSIRV CRDQARRASL GYAYVNFASP QDATNALEHL
101: NFTPLNGKPI RIMFSHRDPS IRKSGFANVF IKNLDPSIDN KALLDTFAAF GTVLSCKIAL DNNGQSKGYG FVQFEQEEAA QNAIKRLNGM LINDKQVYVG
201: LFVRHQERNR GNGSPKFTNV YVKNLSETTT DDDLKNIFGK YGSITSAVVM RDASGMSKCF GFVNFQSSDS AAAAVEHLNG ATFNDDKVWY VGKAQRKSER
301: EAELRAKFEQ ERKNKFEKFK GTNLYLKNLD DSVNDEKLKE LFSEFGTITS CKVMLDPQGL SKGSGFVAFL TPEEATRALN VMNGKMIGRK PLYVAVAQRK
401: EERKARLQAQ FAQIRSPGAM TPLQSGVPGF HSGAPRLAPQ QLYFGQGTPG LIPTQPAGYG FQQQLMPGMR PGVAPNFIMP YQLQRQGQPG QRMGVRRGGN
501: SQQMQHQQQP LLHRNSNQSY RYMANGRNGV DPSMVPQGLM GPVMPLPFDV SGMPVSPMDI QRTGPVPMST LASALASTTP DNQRLMLGEQ LFPLVERIER
601: ETAGKVTGML LEMDQTEVLH LIESPDALKN KVAEAMDVLR ASSSGNDVGD QLGSLMLNE

Best Arabidopsis Sequence Match ( AT1G22760.1 )
(BLAST)

001: MAAAVATGVA PATMVDQVPS PTAQTSVQVP VSIPLPSPVV VADQTHPNSS LYAGDLDPKV TEAHLFDLFK HVANVVSVRV CRDQNRRSLG YAYINFSNPN
101: DAYRAMEALN YTPLFDRPIR IMLSNRDPST RLSGKGNIFI KNLDASIDNK ALFETFSSFG TILSCKVAMD VTGRSKGYGF VQFEKEESAQ AAIDKLNGML
201: MNDKQVFVGH FIRRQERARD ENTPTPRFTN VYVKNLPKEI GEDELRKTFG KFGVISSAVV MRDQSGNSRC FGFVNFECTE AAASAVEKMN GISLGDDVLY
301: VGRAQKKSER EEELRRKFEQ ERINRFEKSQ GANLYLKNLD DSVDDEKLKE MFSEYGNVTS SKVMLNPQGM SRGFGFVAYS NPEEALRALS EMNGKMIGRK
401: PLYIALAQRK EDRRAHLQAL FSQIRAPGPM SGFHHPPGGP MPGPPQHMYV GQNGASMVPS QPIGYGFQPQ FMPGMRPGSG PGNFIVPYPL QRQPQTGPRM
501: GFRRGATNVQ QHIQQQQLMH RNPSPGMRYM NGASNGRNGM DSSVPQGILP PIIPLPIDAS SISHQKAPLL PISKLTSSLA SASPADRTRM LGEQLYPLVE
601: RHEPLHVAKV TGMLLEMDQA EILHLMESPE ALKSKVSEAL DVLRLSVDPT DHDLGFSTTD

Arabidopsis Description

PAB3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O64380]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.