Factsheet for VIT_08s0007g04380.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67800	Soybean	cytosol	71.92	72.15
KRG96088	Soybean	cytosol	71.14	70.91
PGSC0003DMT400021673	Potato	cytosol	67.35	67.99
Solyc10g085750.1.1	Tomato	nucleus	65.93	67.2
KRH32613	Soybean	cytosol	51.58	66.87
KRH19986	Soybean	cytosol	51.42	65.86
PGSC0003DMT400033802	Potato	cytosol	60.41	62.99
Solyc09g008620.1.1	Tomato	cytosol	58.68	61.49
GSMUA_Achr9P10860_001	Banana	cytosol	63.25	56.08
AT2G36660.1	Thale cress	cytosol, plastid	51.26	53.37
VIT_09s0002g03160.t01	Wine grape	cytosol, nucleus, plastid, vacuole	35.49	47.27
TraesCS4A01G099500.1	Wheat	cytosol	48.27	46.93
Os03t0278500-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	47.63	46.68
HORVU4Hr1G059070.1	Barley	cytosol	48.11	46.64
TraesCS4D01G205700.1	Wheat	cytosol	47.95	46.55
TraesCS4B01G204800.1	Wheat	cytosol	47.63	46.39
VIT_18s0001g10170.t01	Wine grape	cytosol	43.85	43.44
VIT_18s0001g10220.t01	Wine grape	cytosol	6.62	42.0
VIT_07s0031g00210.t01	Wine grape	cytosol	43.06	41.74
KXG40160	Sorghum	nucleus	46.85	41.19
VIT_18s0001g02490.t01	Wine grape	plastid	42.74	41.12
VIT_18s0001g10190.t01	Wine grape	cytosol, mitochondrion	8.04	40.8
Zm00001d047790_P001	Maize	plastid	46.69	40.27
VIT_18s0001g10210.t01	Wine grape	cytosol	3.79	38.1
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	42.59	34.31
VIT_04s0023g01470.t01	Wine grape	nucleus	14.35	24.4
VIT_11s0016g00700.t01	Wine grape	mitochondrion, nucleus	14.83	22.27
VIT_18s0001g11080.t01	Wine grape	nucleus	14.35	21.77
VIT_03s0063g00850.t01	Wine grape	nucleus	14.2	21.74
VIT_04s0008g02930.t01	Wine grape	nucleus	13.56	21.66
VIT_06s0004g02040.t01	Wine grape	nucleus	15.14	21.57
VIT_09s0002g00880.t01	Wine grape	mitochondrion, nucleus	14.04	21.19
VIT_19s0090g00280.t01	Wine grape	nucleus	13.56	18.57
VIT_04s0043g01000.t01	Wine grape	cytosol, extracellular, mitochondrion	4.1	17.81

Protein Annotations

Gene3D:1.10.1900.10	EntrezGene:100267544	wikigene:100267544	MapMan:17.4.2.5	Gene3D:3.30.70.330	EMBL:AM445871
ProteinID:CAN74140	ProteinID:CAN74140.1	ProteinID:CBI30200	ProteinID:CBI30200.3	ncoils:Coil	UniProt:D7TIX4
EMBL:FN595991	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677
EntrezGene:LOC100267544	wikigene:LOC100267544	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD
PFAM:PF00076	PFAM:PF00658	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF455
InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SMART:SM00517
SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI0001983E89	ArrayExpress:VIT_08s0007g04380	EnsemblPlantsGene:VIT_08s0007g04380
EnsemblPlants:VIT_08s0007g04380.t01	unigene:Vvi.12999	RefSeq:XP_002264613	RefSeq:XP_002264613.1	SEG:seg	:

Description

Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:D7TIX4]

Coordinates

chr8:-:18326470..18334168

Molecular Weight (calculated)

70014.7 Da

IEP (calculated)

9.577

GRAVY (calculated)

-0.445

Length

634 amino acids

Sequence
(BLAST)

001: MAVPPTVPAA PASLYVGDLH PDITDGLLFD AFSEFKSLAS VRICRDSSSG RSLCYGYVNF ISPQDASHAI EAKNHTMLHG KVIRVMWSHR DPDARRSGIG
101: NVFVKNLSDS IDNVRLQAMF QKFGNILSCK VVVTEDGKSK GYGFVQFESE EYANAAIEKL NGFIIDGKQI YAGKFVRKTD RVLPNPDAKY TNLYIKNLDP
201: DVTEEALREK FFEFGKIASL VISKDENGMS RGFGFVNFES PEDAKRALEA LNGLQLGSKV LYVARAQKKA EREQLLRRQF EEKRNEQILK YRGSNVYVKN
301: IDDNVNDDDL REHFSVCGKI TSAKLMRDQK GISKGFGFVC FSTPDEASKA VNTFHGYMFH RKPLYVAIAQ RKEDRQAQLQ LHYAQRMAGL AGPSTPVIPG
401: GYPPLYYTAP PGVIPPRQGL MYQPLGLRTG WRANNLIPPT RPAFQPSSIP LMPNTPRQHR QNRGRTNGHI PQGGGHSTAF MPHLQQPTQP VISPKDSINQ
501: QRAGQAKYVP NGRSYEMSKG SGIPSAASNS VGTGSQGSEM LSSMLAAASP EQQKQILGEH LYPLVQKQKP DLAAKITGML LEMDNSELLL LLESPESLAA
601: KVEEAVQVLK LSKSKPSGQD TLHPSYLAAE VAVN

Best Arabidopsis Sequence Match ( AT2G36660.1 )
(BLAST)

001: MATVHAALHA ADASSSGSSS PVTASLYVGD LHPSVTEGIL YDAFAEFKSL TSVRLCKDAS SGRSLCYGYA NFLSRQDANL AIEKKNNSLL NGKMIRVMWS
101: VRAPDARRNG VGNVFVKNLP ESVTNAVLQD MFKKFGNIVS CKVATLEDGK SRGYGFVQFE QEDAAHAAIQ TLNSTIVADK EIYVGKFMKK TDRVKPEEKY
201: TNLYMKNLDA DVSEDLLREK FAEFGKIVSL AIAKDENRLC RGYAFVNFDN PEDARRAAET VNGTKFGSKC LYVGRAQKKA EREQLLREQF KEKHEEQKMI
301: AKVSNIYVKN VNVAVTEEEL RKHFSQCGTI TSTKLMCDEK GKSKGFGFVC FSTPEEAIDA VKTFHGQMFH GKPLYVAIAQ KKEDRKMQLQ VQFGNRVEAR
401: KSSSSASVNP GTYAPLYYTN THPGMVYQSY PLMWKSANMI GSSYPNSEAV TYPPMVANAP SKNRQNRIGK LDRNAVSYVP NVYQSTQMLP LSRDFSKQQH
501: SRTYGRGKEM KKSIQQRQSE TVGMEMQLLG ELLHPLVEKL EPQLANKITG MLLEMDKSEL LLLLKSPEDL AVRVDEAFEV LKSSKTNLTA PNTHRSDYLA
601: SGIAGVSIK

Arabidopsis Description

PAB7Polyadenylate-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQA8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.