Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G205700.1 | Wheat | cytosol | 96.18 | 96.32 |
| TraesCS4B01G204800.1 | Wheat | cytosol | 95.11 | 95.55 |
| TraesCS4A01G099500.1 | Wheat | cytosol | 94.8 | 95.09 |
| Os03t0278500-01 | Rice | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 75.84 | 76.66 |
| KXG40160 | Sorghum | nucleus | 69.11 | 62.69 |
| Zm00001d047790_P001 | Maize | plastid | 68.5 | 60.95 |
| VIT_08s0007g04380.t01 | Wine grape | cytosol | 46.64 | 48.11 |
| KRH32613 | Soybean | cytosol | 35.32 | 47.24 |
| KRH19986 | Soybean | cytosol | 35.63 | 47.07 |
| Solyc10g085750.1.1 | Tomato | nucleus | 43.27 | 45.5 |
| KRH67800 | Soybean | cytosol | 43.73 | 45.25 |
| KRG96088 | Soybean | cytosol | 43.88 | 45.13 |
| PGSC0003DMT400021673 | Potato | cytosol | 43.27 | 45.06 |
| GSMUA_Achr9P10860_001 | Banana | cytosol | 46.48 | 42.52 |
| PGSC0003DMT400033802 | Potato | cytosol | 39.14 | 42.11 |
| CDY72408 | Canola | plastid | 5.96 | 41.94 |
| Solyc09g008620.1.1 | Tomato | cytosol | 38.69 | 41.82 |
| AT2G36660.1 | Thale cress | cytosol, plastid | 37.61 | 40.39 |
| Bra034301.1-P | Field mustard | mitochondrion | 6.73 | 39.64 |
| HORVU2Hr1G087390.3 | Barley | cytosol, mitochondrion, nucleus | 35.02 | 37.48 |
| HORVU5Hr1G050560.1 | Barley | plastid | 39.45 | 36.75 |
| CDY33264 | Canola | mitochondrion, nucleus | 10.86 | 35.5 |
| HORVU7Hr1G063970.1 | Barley | cytosol, nucleus, plastid | 38.69 | 35.34 |
| CDY57754 | Canola | nucleus | 11.47 | 35.21 |
| CDY56198 | Canola | cytosol | 24.62 | 32.92 |
| CDY30168 | Canola | cytosol | 27.06 | 32.9 |
| Bra027167.1-P | Field mustard | cytosol, nucleus, peroxisome, plastid | 25.08 | 31.42 |
| HORVU1Hr1G038240.1 | Barley | nucleus | 13.61 | 24.18 |
| HORVU4Hr1G075700.5 | Barley | nucleus | 13.91 | 21.88 |
| HORVU2Hr1G064650.4 | Barley | nucleus | 10.24 | 19.65 |
| HORVU2Hr1G078910.4 | Barley | mitochondrion, nucleus | 12.69 | 19.44 |
| HORVU5Hr1G069180.3 | Barley | nucleus, peroxisome, plastid | 12.84 | 19.4 |
| HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 12.23 | 19.18 |
| HORVU4Hr1G033990.7 | Barley | golgi, nucleus | 12.54 | 18.68 |
| HORVU7Hr1G066510.3 | Barley | plastid | 12.08 | 18.08 |
| HORVU2Hr1G031260.2 | Barley | nucleus, plastid | 13.3 | 17.5 |
| HORVU2Hr1G106810.1 | Barley | nucleus | 11.77 | 16.67 |
| HORVU7Hr1G052090.3 | Barley | nucleus | 12.39 | 16.4 |
| HORVU2Hr1G046380.2 | Barley | nucleus | 8.72 | 12.93 |
| HORVU2Hr1G123110.1 | Barley | nucleus, plastid | 15.14 | 9.31 |
| HORVU2Hr1G122920.2 | Barley | nucleus | 14.22 | 9.19 |
Protein Annotations
| Gene3D:1.10.1900.10 | MapMan:17.4.2.5 | Gene3D:3.30.70.330 | UniProt:A0A287P828 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | EnsemblPlantsGene:HORVU4Hr1G059070 | EnsemblPlants:HORVU4Hr1G059070.1 | InterPro:IPR000504 | InterPro:IPR002004 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:PABP-dom | InterPro:PABP_1234 | InterPro:PABP_HYD | PFAM:PF00076 | PFAM:PF00658 |
| PFscan:PS50102 | PFscan:PS51309 | PANTHER:PTHR24012 | PANTHER:PTHR24012:SF455 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| InterPro:RRM_dom_euk | SMART:SM00360 | SMART:SM00361 | SMART:SM00517 | SUPFAM:SSF54928 | SUPFAM:SSF63570 |
| TIGRFAMs:TIGR01628 | UniParc:UPI000B46D55E | SEG:seg | : | : | : |
Description
Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A287P828]
Coordinates
chrchr4H:+:493805426..493810345
Molecular Weight (calculated)
72519.9 Da
IEP (calculated)
7.159
GRAVY (calculated)
-0.460
Length
654 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAPEAVEM PTTEETPAPA MAAVSEDQAA PAAAAAGTNA TVPALYVGDL HENAQEEHIF DAFSKVGAVT SVRVCRDNAT SRSLRYGYVN YFSQADATIA
101: LEQMNHSLIL DKPIRVMWSN RDPDARRSGV GNVFVKNFGD HVDNILLQDL FSKFGEILSC KVVRNEDGTS RGYGFVQFAA QEPADLAIET LNNSYFEGRE
201: LLVAHFVKKS ERSANNDDKY TNLYMKNIDD DMTEELIKLK FSQYGQVTSV KIMKRDDGTS KGFGFASFKN PESAKKAKEA LNGIALGAKT LYVARAQKKA
301: ERKQYLQLLH EEKRNEIITK SNGSNVYIKN ISDEVDDDTL RERFAEFGNI TSVKIMRDDK GISKGFGFVC YSTPDEAKCA VSSMRGVMFY GKPLYVAIAQ
401: RKEDRKARLE QRFAELATMA GTASPVIPTG YPHVYFAHPS THFPQGPSRQ GFMYPPIGLG QEWRQNVYPS PHSIQQIHAP LMPNTPRQYR NNRGRMTGNM
501: MTFPHAVNYV SHPQAAKDFM SMSRQQFGHA KYIPPDVMSN GLAIHHSGPI SSVNDSFASL LAAAPPDQQR DMLGNRIYPL VERYHPDLAS KITGMLLELD
601: TSYLLSMLNS QDTLAAKVNE CVQALQGQQS TKNKPEDLEA LHPGFLDSTG VNAN
101: LEQMNHSLIL DKPIRVMWSN RDPDARRSGV GNVFVKNFGD HVDNILLQDL FSKFGEILSC KVVRNEDGTS RGYGFVQFAA QEPADLAIET LNNSYFEGRE
201: LLVAHFVKKS ERSANNDDKY TNLYMKNIDD DMTEELIKLK FSQYGQVTSV KIMKRDDGTS KGFGFASFKN PESAKKAKEA LNGIALGAKT LYVARAQKKA
301: ERKQYLQLLH EEKRNEIITK SNGSNVYIKN ISDEVDDDTL RERFAEFGNI TSVKIMRDDK GISKGFGFVC YSTPDEAKCA VSSMRGVMFY GKPLYVAIAQ
401: RKEDRKARLE QRFAELATMA GTASPVIPTG YPHVYFAHPS THFPQGPSRQ GFMYPPIGLG QEWRQNVYPS PHSIQQIHAP LMPNTPRQYR NNRGRMTGNM
501: MTFPHAVNYV SHPQAAKDFM SMSRQQFGHA KYIPPDVMSN GLAIHHSGPI SSVNDSFASL LAAAPPDQQR DMLGNRIYPL VERYHPDLAS KITGMLLELD
601: TSYLLSMLNS QDTLAAKVNE CVQALQGQQS TKNKPEDLEA LHPGFLDSTG VNAN
001: MATVHAALHA ADASSSGSSS PVTASLYVGD LHPSVTEGIL YDAFAEFKSL TSVRLCKDAS SGRSLCYGYA NFLSRQDANL AIEKKNNSLL NGKMIRVMWS
101: VRAPDARRNG VGNVFVKNLP ESVTNAVLQD MFKKFGNIVS CKVATLEDGK SRGYGFVQFE QEDAAHAAIQ TLNSTIVADK EIYVGKFMKK TDRVKPEEKY
201: TNLYMKNLDA DVSEDLLREK FAEFGKIVSL AIAKDENRLC RGYAFVNFDN PEDARRAAET VNGTKFGSKC LYVGRAQKKA EREQLLREQF KEKHEEQKMI
301: AKVSNIYVKN VNVAVTEEEL RKHFSQCGTI TSTKLMCDEK GKSKGFGFVC FSTPEEAIDA VKTFHGQMFH GKPLYVAIAQ KKEDRKMQLQ VQFGNRVEAR
401: KSSSSASVNP GTYAPLYYTN THPGMVYQSY PLMWKSANMI GSSYPNSEAV TYPPMVANAP SKNRQNRIGK LDRNAVSYVP NVYQSTQMLP LSRDFSKQQH
501: SRTYGRGKEM KKSIQQRQSE TVGMEMQLLG ELLHPLVEKL EPQLANKITG MLLEMDKSEL LLLLKSPEDL AVRVDEAFEV LKSSKTNLTA PNTHRSDYLA
601: SGIAGVSIK
101: VRAPDARRNG VGNVFVKNLP ESVTNAVLQD MFKKFGNIVS CKVATLEDGK SRGYGFVQFE QEDAAHAAIQ TLNSTIVADK EIYVGKFMKK TDRVKPEEKY
201: TNLYMKNLDA DVSEDLLREK FAEFGKIVSL AIAKDENRLC RGYAFVNFDN PEDARRAAET VNGTKFGSKC LYVGRAQKKA EREQLLREQF KEKHEEQKMI
301: AKVSNIYVKN VNVAVTEEEL RKHFSQCGTI TSTKLMCDEK GKSKGFGFVC FSTPEEAIDA VKTFHGQMFH GKPLYVAIAQ KKEDRKMQLQ VQFGNRVEAR
401: KSSSSASVNP GTYAPLYYTN THPGMVYQSY PLMWKSANMI GSSYPNSEAV TYPPMVANAP SKNRQNRIGK LDRNAVSYVP NVYQSTQMLP LSRDFSKQQH
501: SRTYGRGKEM KKSIQQRQSE TVGMEMQLLG ELLHPLVEKL EPQLANKITG MLLEMDKSEL LLLLKSPEDL AVRVDEAFEV LKSSKTNLTA PNTHRSDYLA
601: SGIAGVSIK
Arabidopsis Description
PAB7Polyadenylate-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQA8]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.