Factsheet for HORVU4Hr1G033990.7

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus

Predictor Summary:

plastid 1
nucleus 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, nucleus
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G005480.2
HORVU2Hr1G104270.1
HORVU2Hr1G104300.1
HORVU4Hr1G002540.1
HORVU6Hr1G075650.1
HORVU7Hr1G038130.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14100.1	HORVU0Hr1G005480.2	AT1G16500.1	21798944
AT3G14100.1	HORVU2Hr1G104270.1	AT1G16500.1	21798944
AT3G14100.1	HORVU2Hr1G104300.1	AT1G16500.1	21798944
AT3G14100.1	HORVU4Hr1G002540.1	AT1G16500.1	21798944
AT3G14100.1	HORVU6Hr1G075650.1	AT3G47620.1	21798944
AT3G14100.1	HORVU7Hr1G038130.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G148600.1	Wheat	nucleus	86.1	84.94
TraesCS4D01G150600.2	Wheat	nucleus	85.88	83.96
TraesCS4A01G150000.1	Wheat	mitochondrion	85.65	83.93
Os11t0620100-01	Rice	nucleus	78.13	77.78
Zm00001d048824_P004	Maize	nucleus	75.85	74.5
EES08860	Sorghum	nucleus	73.8	73.47
Zm00001d026528_P001	Maize	plastid	35.76	71.36
GSMUA_Achr6P11660_001	Banana	mitochondrion	67.43	69.98
PGSC0003DMT400012431	Potato	mitochondrion, nucleus	66.06	69.54
VIT_09s0002g00880.t01	Wine grape	mitochondrion, nucleus	66.51	69.52
KRH06218	Soybean	nucleus	65.83	69.47
GSMUA_Achr10P...	Banana	mitochondrion	66.97	69.18
AT1G17370.1	Thale cress	mitochondrion, nucleus	65.83	68.97
Solyc06g063000.2.1	Tomato	nucleus	65.38	68.82
KRH47641	Soybean	nucleus	66.06	68.72
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	67.65	68.43
CDY63384	Canola	mitochondrion, nucleus	64.92	68.18
Bra030985.1-P	Field mustard	mitochondrion, nucleus	64.92	68.18
VIT_11s0016g00700.t01	Wine grape	mitochondrion, nucleus	64.92	67.54
Solyc07g042180.2.1	Tomato	nucleus	61.05	67.34
KRH19347	Soybean	mitochondrion, nucleus	62.87	67.32
PGSC0003DMT400058919	Potato	nucleus	63.78	67.15
Solyc03g122180.2.1	Tomato	nucleus	63.78	67.15
PGSC0003DMT400066072	Potato	nucleus	62.19	66.59
AT3G14100.1	Thale cress	nucleus	64.69	66.51
KRH02581	Soybean	mitochondrion	62.19	66.1
Bra030908.1-P	Field mustard	nucleus	62.41	65.39
GSMUA_Achr11P...	Banana	nucleus	66.06	65.32
CDY02486	Canola	nucleus	62.41	65.24
CDY61476	Canola	nucleus	62.19	65.16
Bra037962.1-P	Field mustard	nucleus	62.19	64.85
PGSC0003DMT400007513	Potato	mitochondrion, nucleus	59.23	64.84
CDY51403	Canola	nucleus	61.96	64.76
CDY33092	Canola	nucleus	62.19	64.24
Solyc12g009230.1.1	Tomato	mitochondrion, nucleus	58.31	63.84
AT1G54080.2	Thale cress	nucleus	60.82	62.09
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	67.43	59.68
HORVU2Hr1G031260.2	Barley	nucleus, plastid	63.33	55.94
VIT_04s0043g01000.t01	Wine grape	cytosol, extracellular, mitochondrion	17.77	53.42
CDX81822	Canola	mitochondrion, nucleus	64.92	52.29
HORVU7Hr1G052090.3	Barley	nucleus	56.49	50.2
HORVU6Hr1G048390.1	Barley	cytoskeleton, nucleus, peroxisome	22.32	23.5
HORVU5Hr1G069180.3	Barley	nucleus, peroxisome, plastid	22.55	22.86
HORVU4Hr1G075700.5	Barley	nucleus	21.41	22.6
HORVU2Hr1G078910.4	Barley	mitochondrion, nucleus	21.87	22.48
HORVU1Hr1G038240.1	Barley	nucleus	16.17	19.29
HORVU2Hr1G106810.1	Barley	nucleus	19.82	18.83
HORVU2Hr1G046380.2	Barley	nucleus	18.68	18.59
HORVU2Hr1G064650.4	Barley	nucleus	14.12	18.18
HORVU7Hr1G066510.3	Barley	plastid	17.54	17.62
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	20.05	14.4
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	20.73	12.71
HORVU4Hr1G059070.1	Barley	cytosol	18.68	12.54
HORVU5Hr1G050560.1	Barley	plastid	19.82	12.39
HORVU2Hr1G122920.2	Barley	nucleus	23.92	10.38
HORVU2Hr1G123110.1	Barley	nucleus, plastid	23.46	9.69

Protein Annotations

MapMan:16.9.3	Gene3D:3.30.70.330	UniProt:A0A287NSC6	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	EnsemblPlantsGene:HORVU4Hr1G033990	EnsemblPlants:HORVU4Hr1G033990.7	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44160	PANTHER:PTHR44160:SF2	InterPro:RBD_domain_sf	InterPro:RRM_dom
InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928	UniParc:UPI000B4892EC	SEG:seg

Description

No Description!

Coordinates

chrchr4H:-:241547033..241555579

Molecular Weight (calculated)

47932.4 Da

IEP (calculated)

6.577

GRAVY (calculated)

-0.249

Length

439 amino acids

Sequence
(BLAST)

001: SCMQQHIVDL YSVPESCVLW TRSLACSSLH TLLHSSFFPF KMLGQYSLFV TPVILQIEPI VSGNLPPGFD SSTCRSVYVG NIHLQVTDSL LHEVFQSIGP
101: VEGCKLIRKE KSSFGFVDYY DRRYAALAIV SLNGRQLFGQ PIKVNWAYAS TQREDTSGHF NIFVGDLCPE VTDAALFVFF SAYSTCSDAR VMWDQQSGRS
201: RGFGFVSFRN QQDAQTAINE LNGKWLGNRQ IRCNWATKGA NAGEVKQSTD SKGMVELING SSEAGKENAN EDGPEDNPQY TTVYVGNLSH DIDSNDVHRF
301: FHLLGAGSIE EVRVTRDKGF GFVRYSTHEE AAQAIQTGNG QLIGGRQIKC SWGSKPTPPG TASAPLPPPA SAPYTPGVSA ADLISYERSL ALSKMAANPA
401: LMGQHAALRQ AAMGAGASQA IYDGGFQSVN PQQQQLMYY

Best Arabidopsis Sequence Match ( AT1G17370.1 )
(BLAST)

001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ

Arabidopsis Description

UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.