Factsheet for PGSC0003DMT400066072

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g042180.2.1	Tomato	nucleus	93.9	96.73
PGSC0003DMT400007513	Potato	mitochondrion, nucleus	78.54	80.3
VIT_11s0016g00700.t01	Wine grape	mitochondrion, nucleus	82.2	79.86
PGSC0003DMT400012431	Potato	mitochondrion, nucleus	76.34	75.06
KRH19347	Soybean	mitochondrion, nucleus	74.15	74.15
KRH02581	Soybean	mitochondrion	74.63	74.09
GSMUA_Achr6P11660_001	Banana	mitochondrion	75.37	73.05
GSMUA_Achr10P...	Banana	mitochondrion	73.66	71.06
PGSC0003DMT400058919	Potato	nucleus	71.46	70.26
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	73.9	69.82
Zm00001d026528_P001	Maize	plastid	36.1	67.27
GSMUA_Achr11P...	Banana	nucleus	71.22	65.77
Os11t0620100-01	Rice	nucleus	69.27	64.4
TraesCS4B01G148600.1	Wheat	nucleus	69.76	64.27
Os07t0615400-01	Rice	nucleus	66.83	64.17
Zm00001d048824_P004	Maize	nucleus	69.02	63.31
EES08860	Sorghum	nucleus	67.56	62.81
TraesCS4D01G150600.2	Wheat	nucleus	68.78	62.81
HORVU4Hr1G033990.7	Barley	golgi, nucleus	66.59	62.19
TraesCS4A01G150000.1	Wheat	mitochondrion	67.8	62.05
TraesCS2D01G176700.1	Wheat	nucleus	63.9	61.5
TraesCS2B01G195400.1	Wheat	nucleus	63.9	61.07
TraesCS2A01G169100.1	Wheat	nucleus	63.66	60.98
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	73.17	60.48
HORVU2Hr1G031260.2	Barley	nucleus, plastid	63.9	52.72
Zm00001d026522_P001	Maize	nucleus	28.54	47.95
PGSC0003DMT400057203	Potato	cytosol	27.56	28.04
PGSC0003DMT400013036	Potato	nucleus	26.83	27.5
PGSC0003DMT400020621	Potato	nucleus	26.34	27.27
PGSC0003DMT400029379	Potato	nucleus	26.1	26.75
PGSC0003DMT400042504	Potato	nucleus	25.61	25.42
PGSC0003DMT400066648	Potato	nucleus	25.37	24.76
PGSC0003DMT400018998	Potato	nucleus	23.66	23.21
PGSC0003DMT400012508	Potato	nucleus	6.83	22.58
PGSC0003DMT400023075	Potato	nucleus	18.54	20.94
PGSC0003DMT400014744	Potato	nucleus	18.05	20.33
PGSC0003DMT400066245	Potato	extracellular	24.39	15.55
PGSC0003DMT400039842	Potato	cytosol	20.98	14.33
PGSC0003DMT400021673	Potato	cytosol	21.22	13.85
PGSC0003DMT400033802	Potato	cytosol	20.0	13.49
PGSC0003DMT400064531	Potato	cytosol	15.85	12.22

Protein Annotations

EntrezGene:102582636	MapMan:16.9.3	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M1CEZ1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
EnsemblPlantsGene:PGSC0003DMG400025722	PGSC:PGSC0003DMG400025722	EnsemblPlants:PGSC0003DMT400066072	PFscan:PS50102	PANTHER:PTHR44160	PANTHER:PTHR44160:SF4
InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928
UniParc:UPI00029660B6	RefSeq:XP_006367694.1	SEG:seg	:	:	:

Description

Oligouridylate binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025722]

Coordinates

chr7:-:39571078..39578237

Molecular Weight (calculated)

44461.3 Da

IEP (calculated)

7.046

GRAVY (calculated)

-0.347

Length

410 amino acids

Sequence
(BLAST)

001: MMQQRLKQQQ ALMQQSLYHP ALLAPPQIEP ILSGNLPPGF DSSTCRSVYV GNIHPQVTEP LLQEVFSSTG PLEGCKLIKK EKSSYGFVDY FDRRSAALAI
101: VTLNGRNLFG QPIKVNWAYT STQREDTSSH FNIFVGDLSP EVTDATLYAC FSVYPSCSDA KVMWDQKSGR SRGFGFVSFR NQQEAQSAIN DLNGKWLGSR
201: QIRCNWATKG AGGIDDNKSS DAKSVVELTS GTSDDGHDNA NEDAPENSPQ YTTVYVGNLS PEVTLVDLHR HFHGLGAGVI EDVRIQRDKG FGFVRYSTNA
301: EAAQAIQLGN AQFLFGKPIK CSWGSKPTLP GASSTPLPPP AVGHVPGISV TDLAAYERQL ALARMGGSQA LMHSQALMHS QGQRIGVASQ AIYDGGYGGI
401: AATTQPPMYY

Best Arabidopsis Sequence Match ( AT1G17370.1 )
(BLAST)

001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ

Arabidopsis Description

UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.