Factsheet for PGSC0003DMT400057203

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
plastid 3
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400041675
PGSC0003DMT400042166
PGSC0003DMT400043200
PGSC0003DMT400043273

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27000.1	PGSC0003DMT400042166	AT5G08330.1	21798944
AT4G27000.1	PGSC0003DMT400041675	AT5G10350.1	21798944
AT4G27000.1	PGSC0003DMT400043273	AT5G10350.1	21798944
AT4G27000.1	PGSC0003DMT400043200	AT5G16560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g064510.2.1	Tomato	plastid	95.53	93.9
AT4G27000.1	Thale cress	nucleus	66.5	64.58
PGSC0003DMT400029379	Potato	nucleus	64.02	64.5
PGSC0003DMT400013036	Potato	nucleus	63.03	63.5
CDX89287	Canola	nucleus	64.76	63.04
Bra019078.1-P	Field mustard	nucleus	64.27	62.86
CDY29263	Canola	nucleus	64.27	61.81
CDY14290	Canola	nucleus	63.77	61.63
VIT_19s0090g00280.t01	Wine grape	nucleus	70.72	61.56
Bra010418.1-P	Field mustard	nucleus	57.57	61.38
PGSC0003DMT400042504	Potato	nucleus	62.78	61.26
CDY46671	Canola	nucleus	64.52	60.61
CDX92786	Canola	mitochondrion, nucleus, peroxisome	64.02	60.56
CDY66423	Canola	nucleus	64.02	60.56
Bra002947.1-P	Field mustard	nucleus	58.56	59.6
Bra026387.1-P	Field mustard	nucleus	57.82	59.29
CDY17286	Canola	nucleus	58.81	58.52
AT5G54900.1	Thale cress	nucleus	56.08	58.4
CDY19874	Canola	nucleus	59.55	57.28
PGSC0003DMT400020621	Potato	nucleus	49.38	50.25
PGSC0003DMT400066648	Potato	nucleus	50.62	48.57
PGSC0003DMT400018998	Potato	nucleus	49.38	47.61
Zm00001d021149_P001	Maize	cytosol	17.87	43.64
PGSC0003DMT400066072	Potato	nucleus	28.04	27.56
PGSC0003DMT400007513	Potato	mitochondrion, nucleus	26.05	26.18
PGSC0003DMT400012431	Potato	mitochondrion, nucleus	26.8	25.9
PGSC0003DMT400058919	Potato	nucleus	26.05	25.18
PGSC0003DMT400012508	Potato	nucleus	5.71	18.55
PGSC0003DMT400023075	Potato	nucleus	14.64	16.25
PGSC0003DMT400014744	Potato	nucleus	14.39	15.93
PGSC0003DMT400066245	Potato	extracellular	23.82	14.93
PGSC0003DMT400039842	Potato	cytosol	20.84	14.0
PGSC0003DMT400033802	Potato	cytosol	20.1	13.32
PGSC0003DMT400021673	Potato	cytosol	20.1	12.9
PGSC0003DMT400064531	Potato	cytosol	16.63	12.59

Protein Annotations

MapMan:16.9.4	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	UniProt:M1C0M5	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	EnsemblPlantsGene:PGSC0003DMG400022220
PGSC:PGSC0003DMG400022220	EnsemblPlants:PGSC0003DMT400057203	PFscan:PS50102	PANTHER:PTHR43955	PANTHER:PTHR43955:SF8	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002958643	SEG:seg	:

Description

RNA Binding Protein 45 [Source:PGSC_GENE;Acc:PGSC0003DMG400022220]

Coordinates

chr7:-:54800999..54804937

Molecular Weight (calculated)

44462.6 Da

IEP (calculated)

5.749

GRAVY (calculated)

-0.761

Length

403 amino acids

Sequence
(BLAST)

001: MAPMSMDQYQ QQAPPTQQQQ QWMMQPPQAQ QPQFQPQAQP SWGQQQQQPS QPMSQQYGAS NPSPTSNVNP NELRSLWIGD LQYWMDENYL STCFYHTGEL
101: VSAKVIRNKQ SGQSEGYGFL EFRSHAAAET VLQTYNGALM PNVEQNFRMN WASLGAGERR DDSPEYTIFV GDLAADVTDY VLQETFKPVY SSVKGAKVVA
201: DRITGRTKGY GFVKFADESE QLRAMTEMNG VLCSSRPMRI GPAANKKPMG TPQKATYQNP QATQGESDPN NTTIFVGGLD PSVAEEHLRQ VFSPYGELVH
301: VKIVAGKRCG FVQFGSRASA EQALSSLNGA QLGGQSIRLS WGRSPSNKQS DQTQWGGSAG GGAGAYYGYA QGYDAYGYAP PPQDPNMYYG NYPGYGNYQQ
401: PQQ

Best Arabidopsis Sequence Match ( AT4G27000.1 )
(BLAST)

001: MMQQPPPASN GAATGPGQIP SDQQAYLQQQ QSWMMQHQQQ QQGQPPAGWN QQSAPSSGQP QQQQYGGGGS QNPGSAGEIR SLWIGDLQPW MDENYLMNVF
101: GLTGEATAAK VIRNKQNGYS EGYGFIEFVN HATAERNLQT YNGAPMPSSE QAFRLNWAQL GAGERRQAEG PEHTVFVGDL APDVTDHMLT ETFKAVYSSV
201: KGAKVVNDRT TGRSKGYGFV RFADESEQIR AMTEMNGQYC SSRPMRTGPA ANKKPLTMQP ASYQNTQGNS GESDPTNTTI FVGAVDQSVT EDDLKSVFGQ
301: FGELVHVKIP AGKRCGFVQY ANRACAEQAL SVLNGTQLGG QSIRLSWGRS PSNKQTQPDQ AQYGGGGGYY GYPPQGYEAY GYAPPPQDPN AYYGGYAGGG
401: YGNYQQPGGY QQQQQ

Arabidopsis Description

RBP45CPolyadenylate-binding protein RBP45C [Source:UniProtKB/Swiss-Prot;Acc:Q93W34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.