Factsheet for Bra019078.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra008613.1-P
Bra023570.1-P
Bra028662.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27000.1	Bra028662.1-P	AT5G08330.1	21798944
AT4G27000.1	Bra008613.1-P	AT5G16560.1	21798944
AT4G27000.1	Bra023570.1-P	AT5G16560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46671	Canola	nucleus	99.51	95.57
AT4G27000.1	Thale cress	nucleus	85.19	84.58
Bra010418.1-P	Field mustard	nucleus	77.18	84.13
Bra026387.1-P	Field mustard	nucleus	77.91	81.68
Bra002947.1-P	Field mustard	nucleus	71.84	74.75
Solyc07g064510.2.1	Tomato	plastid	64.32	64.63
PGSC0003DMT400057203	Potato	cytosol	62.86	64.27
Bra031774.1-P	Field mustard	nucleus	56.55	59.14
VIT_19s0090g00280.t01	Wine grape	nucleus	65.78	58.53
Bra027446.1-P	Field mustard	cytosol	41.26	53.12
Bra018813.1-P	Field mustard	mitochondrion, nucleus	45.39	47.95
Bra001735.1-P	Field mustard	nucleus	45.63	45.63
Bra002230.1-P	Field mustard	nucleus	45.87	45.11
Bra022389.1-P	Field mustard	nucleus	46.36	44.84
Bra040663.1-P	Field mustard	nucleus	39.81	44.09
Bra006502.1-P	Field mustard	nucleus	45.87	43.95
Zm00001d021149_P001	Maize	cytosol	17.23	43.03
Bra037538.1-P	Field mustard	nucleus	40.53	41.44
Bra014216.1-P	Field mustard	nucleus	39.56	28.5
Bra030908.1-P	Field mustard	nucleus	25.49	25.06
Bra037962.1-P	Field mustard	nucleus	25.49	24.94
Bra030985.1-P	Field mustard	mitochondrion, nucleus	25.0	24.64
Bra034301.1-P	Field mustard	mitochondrion	6.07	22.52
Bra039603.1-P	Field mustard	nucleus	15.29	17.31
Bra037217.1-P	Field mustard	nucleus	15.78	17.06
Bra016371.1-P	Field mustard	plastid	23.79	16.47
Bra013104.1-P	Field mustard	cytosol	24.27	16.23
Bra011488.1-P	Field mustard	cytosol, plastid	24.03	16.15
Bra034603.1-P	Field mustard	cytosol, plastid	24.03	15.99
Bra032172.1-P	Field mustard	cytosol	24.51	15.68
Bra039195.1-P	Field mustard	cytosol, nucleus, plastid	23.06	15.18
Bra018797.1-P	Field mustard	cytosol	23.54	14.85
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	18.45	14.56
Bra015220.1-P	Field mustard	cytosol	19.9	14.19
Bra007984.1-P	Field mustard	plastid	21.36	14.1
Bra003915.1-P	Field mustard	cytosol	21.6	13.73
Bra016118.1-P	Field mustard	plastid	22.57	13.6
Bra022413.1-P	Field mustard	cytosol	11.89	10.99
Bra039841.1-P	Field mustard	cytosol	5.1	9.86

Protein Annotations

EnsemblPlants:Bra019078.1	EnsemblPlants:Bra019078.1-P	EnsemblPlantsGene:Bra019078	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR43955	PANTHER:PTHR43955:SF8	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002541262	UniProt:M4DRD5	MapMan:16.9.4	:

Description

AT4G27000 (E=5e-145) ATRBP45C | ATRBP45C; RNA binding

Coordinates

chrA03:-:26441050..26444045

Molecular Weight (calculated)

44419.6 Da

IEP (calculated)

6.166

GRAVY (calculated)

-0.708

Length

412 amino acids

Sequence
(BLAST)

001: MMQQPPPAAN GAAAGSGQIP SDQQAYHHHQ SWMMQQQQLQ GQPPAAWNPQ SAPSPGQQYG GGSQNPGSAG EIKSLWIGDL QPWMDEGYLM SIFSITGEVQ
101: QAKVIRNKLT GLTEGYGFIE FVSHAAAERI LQTYNGAQMP NCEQTFRLNW AQLGAGERRQ SDGPEHTVFV GDLAPDVTDY VLTETFKVVY SSVKGAKVVT
201: DRATGRSKGY GFVKFGDESE QIRAMTEMNG QYCSSRPMRI GPAANKKPLT MQQQPGAYQN TQGNPGEGDP TNTTIFVGAL DESVTEDVLK SVFGQFGELV
301: HVKIPAGKRC GFVQYANRGC AEQALNSLNG TQLGGQSIRL SWGRTPSNKQ TQPEQAQYGG GGGGGYYGYP PQGYEGYGYA PPPQDPNAYY GGYPGAGYGN
401: SQQPGGYQQH QQ

Best Arabidopsis Sequence Match ( AT4G27000.1 )
(BLAST)

001: MMQQPPPASN GAATGPGQIP SDQQAYLQQQ QSWMMQHQQQ QQGQPPAGWN QQSAPSSGQP QQQQYGGGGS QNPGSAGEIR SLWIGDLQPW MDENYLMNVF
101: GLTGEATAAK VIRNKQNGYS EGYGFIEFVN HATAERNLQT YNGAPMPSSE QAFRLNWAQL GAGERRQAEG PEHTVFVGDL APDVTDHMLT ETFKAVYSSV
201: KGAKVVNDRT TGRSKGYGFV RFADESEQIR AMTEMNGQYC SSRPMRTGPA ANKKPLTMQP ASYQNTQGNS GESDPTNTTI FVGAVDQSVT EDDLKSVFGQ
301: FGELVHVKIP AGKRCGFVQY ANRACAEQAL SVLNGTQLGG QSIRLSWGRS PSNKQTQPDQ AQYGGGGGYY GYPPQGYEAY GYAPPPQDPN AYYGGYAGGG
401: YGNYQQPGGY QQQQQ

Arabidopsis Description

RBP45CPolyadenylate-binding protein RBP45C [Source:UniProtKB/Swiss-Prot;Acc:Q93W34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.