Factsheet for Bra006502.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88893	Canola	cytosol, nucleus, peroxisome	99.77	99.77
CDX70874	Canola	cytosol, nucleus, peroxisome	98.84	98.84
AT5G19350.1	Thale cress	cytosol	86.74	87.76
Bra002230.1-P	Field mustard	nucleus	85.35	87.59
KRH29709	Soybean	cytosol	62.33	66.83
KRH24702	Soybean	nucleus	61.16	65.59
Solyc11g065880.1.1	Tomato	nucleus	63.02	64.99
KRH23136	Soybean	cytosol	63.26	64.92
PGSC0003DMT400018998	Potato	nucleus	62.33	64.11
TraesCS4A01G014200.1	Wheat	nucleus	61.86	63.94
HORVU4Hr1G075700.5	Barley	nucleus	61.86	63.94
VIT_06s0004g02040.t01	Wine grape	nucleus	66.05	63.82
EER95414	Sorghum	nucleus	60.7	62.89
Os03t0174100-02	Rice	nucleus	60.7	62.74
GSMUA_Achr8P31320_001	Banana	nucleus	57.67	62.0
KRH10201	Soybean	mitochondrion, nucleus, plastid	41.16	60.2
TraesCS4D01G288600.1	Wheat	nucleus	61.16	57.55
TraesCS4B01G289600.1	Wheat	nucleus	61.4	57.52
Bra027446.1-P	Field mustard	cytosol	36.74	49.38
Bra031774.1-P	Field mustard	nucleus	43.95	47.97
Bra019078.1-P	Field mustard	nucleus	43.95	45.87
Bra010418.1-P	Field mustard	nucleus	39.53	44.97
Bra026387.1-P	Field mustard	nucleus	40.7	44.53
Bra002947.1-P	Field mustard	nucleus	40.23	43.69
Bra018813.1-P	Field mustard	mitochondrion, nucleus	39.07	43.08
Bra001735.1-P	Field mustard	nucleus	37.67	39.32
Bra022389.1-P	Field mustard	nucleus	38.84	39.2
Bra040663.1-P	Field mustard	nucleus	33.49	38.71
Bra037538.1-P	Field mustard	nucleus	34.19	36.48
Zm00001d027869_P002	Maize	nucleus	48.84	27.52
Bra014216.1-P	Field mustard	nucleus	34.19	25.7
Bra030985.1-P	Field mustard	mitochondrion, nucleus	21.63	22.25
Bra037962.1-P	Field mustard	nucleus	21.63	22.09
Bra030908.1-P	Field mustard	nucleus	21.4	21.96
Bra034301.1-P	Field mustard	mitochondrion	5.58	21.62
Bra011488.1-P	Field mustard	cytosol, plastid	24.88	17.46
Bra034603.1-P	Field mustard	cytosol, plastid	24.88	17.29
Bra013104.1-P	Field mustard	cytosol	24.65	17.21
Bra039603.1-P	Field mustard	nucleus	14.19	16.76
Bra037217.1-P	Field mustard	nucleus	14.65	16.54
Bra016371.1-P	Field mustard	plastid	22.09	15.97
Bra032172.1-P	Field mustard	cytosol	23.72	15.84
Bra018797.1-P	Field mustard	cytosol	23.49	15.47
Bra015220.1-P	Field mustard	cytosol	20.23	15.05
Bra039195.1-P	Field mustard	cytosol, nucleus, plastid	20.93	14.38
Bra007984.1-P	Field mustard	plastid	20.47	14.1
Bra022413.1-P	Field mustard	cytosol	14.19	13.68
Bra016118.1-P	Field mustard	plastid	21.4	13.45
Bra003915.1-P	Field mustard	cytosol	20.23	13.43
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	16.05	13.22
Bra039841.1-P	Field mustard	cytosol	4.42	8.92

Protein Annotations

EnsemblPlants:Bra006502.1	EnsemblPlants:Bra006502.1-P	EnsemblPlantsGene:Bra006502	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR43955	PANTHER:PTHR43955:SF8	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000253FF4A	UniProt:M4CQL3	MapMan:16.9.4	:

Description

AT5G19350 (E=3e-180) | RNA-binding protein 45 (RBP45), putative

Coordinates

chrA03:+:3813530..3815859

Molecular Weight (calculated)

46864.0 Da

IEP (calculated)

5.249

GRAVY (calculated)

-0.355

Length

430 amino acids

Sequence
(BLAST)

001: MAMMMPPQQQ GGYHHPQTLE EVRTLWIGDL QYWVDENYLT SCFSQTGELV SVKVIRNKIT GQPEGYGVIE FVSHAAAERT LQTYNGTLMP GTEVAFRLNW
101: ASFGSGQKVD AGPDHSIFVG DLAPDVTDYL LHETFRVHYS SVRGAKVVTD PSTGRSKGYG FVKFADESER NKAMSEMNGL YCSTRPMRIS VATPRKTVGV
201: QQQYVTKAAY PVPVPVPSAA AAPAYVAQPA QVLAPENDIT CTTVLIANLD PNVTEEELKK AFSPLGEVIY VNIPATKGYG YVQFKTRPSA EEAIQKMQGH
301: VIGQQAIRIS WSKNPGQDGY VTQADPSQWN GYYGYGQGYE AYAYGAAQDP SVYAYGGYGY PQYPQQGEAT EEVTNSAAGG VAGAEQELYD PMATPDVEKL
401: NAVSLSVHAN AILGRLLWQR TSALSSQLGK

Best Arabidopsis Sequence Match ( AT5G19350.1 )
(BLAST)

001: MAMMHPPQPP QGSYHHPQTL EEVRTLWIGD LQYWVDENYL TSCFSQTGEL VSVKVIRNKI TGQPEGYGFI EFISHAAAER TLQTYNGTQM PGTELTFRLN
101: WASFGSGQKV DAGPDHSIFV GDLAPDVTDY LLQETFRVHY SSVRGAKVVT DPSTGRSKGY GFVKFAEESE RNRAMAEMNG LYCSTRPMRI SAATPKKNVG
201: VQQQYVTKAV YPVTVPSAVA APVQAYVAPP ESDVTCTTIS VANLDQNVTE EELKKAFSQL GEVIYVKIPA TKGYGYVQFK TRPSAEEAVQ RMQGQVIGQQ
301: AVRISWSKNP GQDGWVTQAD PNQWNGYYGY GQGYDAYAYG ATQDPSVYAY GGYGYPQYPQ QGEGTQDISN SAAGGVAGAE QELYDPLATP DVDKLNAAYL
401: SVHASAILGR PMWQRTSSLT SQLGK

Arabidopsis Description

RBP47B'Polyadenylate-binding protein RBP47B' [Source:UniProtKB/Swiss-Prot;Acc:Q8VXZ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.