CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

nucleus 2
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23136	Soybean	cytosol	93.88	65.87
KRH24702	Soybean	nucleus	76.19	55.86
KRH29709	Soybean	cytosol	75.17	55.11
VIT_06s0004g02040.t01	Wine grape	nucleus	74.15	48.99
PGSC0003DMT400018998	Potato	nucleus	67.69	47.61
Solyc11g065880.1.1	Tomato	nucleus	67.35	47.48
AT5G19350.1	Thale cress	cytosol	63.95	44.24
HORVU4Hr1G075700.5	Barley	nucleus	61.9	43.75
Os03t0174100-02	Rice	nucleus	61.56	43.51
TraesCS4A01G014200.1	Wheat	nucleus	61.56	43.51
CDY13992	Canola	nucleus	61.56	43.2
EER95414	Sorghum	nucleus	60.88	43.13
Bra002230.1-P	Field mustard	nucleus	60.54	42.48
CDX92537	Canola	nucleus	60.54	42.48
CDX88893	Canola	cytosol, nucleus, peroxisome	60.2	41.16
CDX70874	Canola	cytosol, nucleus, peroxisome	60.2	41.16
Bra006502.1-P	Field mustard	nucleus	60.2	41.16
GSMUA_Achr8P31320_001	Banana	nucleus	55.78	41.0
TraesCS4B01G289600.1	Wheat	nucleus	61.56	39.43
TraesCS4D01G288600.1	Wheat	nucleus	60.88	39.17
KRH61258	Soybean	nucleus	40.82	29.34
KRH20867	Soybean	nucleus	40.48	29.1
KRH05723	Soybean	nucleus	40.82	29.06
KRH51075	Soybean	endoplasmic reticulum	38.78	28.72
KRH11417	Soybean	nucleus	39.8	28.47
KRH02082	Soybean	nucleus	38.78	28.36
KRH15315	Soybean	nucleus	40.48	28.0
KRH51956	Soybean	nucleus	39.12	27.98
KRH71168	Soybean	nucleus	38.1	25.99
KRH50251	Soybean	nucleus	37.07	25.29
Zm00001d027869_P002	Maize	nucleus	43.54	16.78
KRH52613	Soybean	nucleus	23.81	16.09
KRH61952	Soybean	mitochondrion	23.13	16.0
KRH02581	Soybean	mitochondrion	21.09	15.01
KRH19347	Soybean	mitochondrion, nucleus	20.07	14.39
KRH47641	Soybean	nucleus	20.41	14.22
KRH06218	Soybean	nucleus	20.07	14.18
KRH50336	Soybean	cytosol	27.89	12.6
KRH70673	Soybean	nucleus	27.55	12.5
KRH15385	Soybean	nucleus	27.55	12.42
KRH05656	Soybean	endoplasmic reticulum, nucleus	26.87	12.08
KRH52023	Soybean	cytosol, endoplasmic reticulum	25.85	12.06
KRH61326	Soybean	cytosol, endoplasmic reticulum	25.85	12.06
KRG91724	Soybean	cytosol	26.19	11.81
KRH70233	Soybean	cytosol	23.81	11.13
KRH32613	Soybean	cytosol	18.37	11.04
KRH08608	Soybean	endoplasmic reticulum	24.83	10.96
KRH67800	Soybean	cytosol	23.47	10.92
KRG96088	Soybean	cytosol	23.13	10.69
KRH19986	Soybean	cytosol	17.69	10.51
KRH27525	Soybean	nucleus	9.18	7.42
KRH36396	Soybean	endoplasmic reticulum	9.18	7.4

Protein Annotations

EntrezGene:100818294	MapMan:16.9.4	Gene3D:3.30.70.330	UniProt:A0A0R0G4H8	EMBL:ACUP02009122	EnsemblPlantsGene:GLYMA_15G034200
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KRH10201	ProteinID:KRH10201	ProteinID:KRH10201.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR43955	PANTHER:PTHR43955:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI00023D1ED9	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:2727304..2729830

Molecular Weight (calculated)

32295.0 Da

IEP (calculated)

6.780

GRAVY (calculated)

-0.459

Length

294 amino acids

Sequence
(BLAST)

001: MFRAHYPSVR GAKVVSDPNT GRSKGYGFVK FSDENERNRA MTEMNGVYCS TRPMRISAAT PKKTTSAYAA PAAPVPKPVY PVPAYTAPVV QVQPPEYDVN
101: NTAIFVGNLD LNVSEEELKQ NFLQFGEIVS VKVQSGKGCG FVQFGTRASA EEAIQKMQEK MIGQQVVRIS WGRTLTARQD LPGGWGPQMD PNQWSAYYGY
201: GQGYEAYAYG AAHDPSFYAY GAYAGYAQYP QQVEGAQDLS GMSVPTMEQR EELYDPLAMP DVDKLNAAYL SVHGSAILGR LPWQKTCSTS LQQA

Best Arabidopsis Sequence Match ( AT1G47490.1 )
(BLAST)

001: MADVKIQSES ESSDSHPVVD NQPPPPPPPP QQPAKEEENQ PKTSPTPPPH WMRYPPTVII PHQMMYAPPP FPPYHQYPNH HHLHHQSRGN KHQNAFNGEN
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS

Arabidopsis Description

RBP47CPolyadenylate-binding protein RBP47C [Source:UniProtKB/Swiss-Prot;Acc:Q9SX79]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.