CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02082	Soybean	nucleus	97.73	96.52
KRH20867	Soybean	nucleus	89.17	86.55
KRH11417	Soybean	nucleus	87.66	84.67
PGSC0003DMT400029379	Potato	nucleus	68.77	68.25
Solyc10g005260.2.1	Tomato	nucleus	69.77	67.4
PGSC0003DMT400013036	Potato	nucleus	65.49	65.0
Solyc03g031720.2.1	Tomato	nucleus	66.25	64.94
Solyc02g080420.2.1	Tomato	extracellular, nucleus, plastid	67.0	64.41
PGSC0003DMT400042504	Potato	nucleus	66.5	63.92
CDY34835	Canola	nucleus	63.22	63.87
AT1G11650.2	Thale cress	nucleus	64.23	62.96
Bra031774.1-P	Field mustard	nucleus	62.47	62.94
TraesCS7A01G295700.3	Wheat	plastid	47.61	60.77
Os04t0625800-01	Rice	nucleus	64.48	60.24
TraesCS6A01G100800.1	Wheat	nucleus	61.46	59.51
TraesCS6D01G081700.2	Wheat	plastid	61.46	59.51
Os08t0190200-00	Rice	nucleus	66.25	59.5
Zm00001d026346_P002	Maize	extracellular	62.97	58.41
KXG27152	Sorghum	nucleus	63.73	58.29
TraesCS6B01G128900.2	Wheat	plastid	60.96	58.03
TraesCS7B01G199000.1	Wheat	nucleus, plastid	61.21	57.72
KXG24662	Sorghum	nucleus	65.49	57.02
TraesCS2A01G473000.1	Wheat	nucleus	62.47	56.88
Zm00001d049416_P001	Maize	extracellular, nucleus	65.24	56.8
Zm00001d002244_P003	Maize	nucleus	63.98	56.7
TraesCS2D01G472700.1	Wheat	nucleus	62.22	56.65
TraesCS2B01G495700.1	Wheat	nucleus	61.96	56.42
KRH50251	Soybean	nucleus	55.42	51.04
KRH61258	Soybean	nucleus	52.39	50.86
KRH71168	Soybean	nucleus	55.16	50.81
KRH05723	Soybean	nucleus	52.39	50.36
HORVU7Hr1G066510.3	Barley	plastid	54.91	49.89
CDY34639	Canola	nucleus, plastid, vacuole	63.48	49.7
HORVU2Hr1G106810.1	Barley	nucleus	57.68	49.57
KRH15315	Soybean	nucleus	52.14	48.71
KRH51956	Soybean	nucleus	49.87	48.18
KRH23136	Soybean	cytosol	50.38	47.73
KRH29709	Soybean	cytosol	47.1	46.63
KRH24702	Soybean	nucleus	45.84	45.39
KRH10201	Soybean	mitochondrion, nucleus, plastid	28.72	38.78
KRH52613	Soybean	nucleus	30.23	27.59
KRH61952	Soybean	mitochondrion	29.22	27.29
KRH47641	Soybean	nucleus	28.97	27.25
KRH06218	Soybean	nucleus	28.46	27.16
KRH02581	Soybean	mitochondrion	26.2	25.18
KRH19347	Soybean	mitochondrion, nucleus	25.94	25.12
KRH27525	Soybean	nucleus	15.62	17.03
KRH36396	Soybean	endoplasmic reticulum	15.62	16.99
KRH19986	Soybean	cytosol	21.16	16.97
KRH32613	Soybean	cytosol	20.65	16.77
KRH15385	Soybean	nucleus	24.94	15.18
KRH05656	Soybean	endoplasmic reticulum, nucleus	24.94	15.14
KRH70673	Soybean	nucleus	24.43	14.97
KRH61326	Soybean	cytosol, endoplasmic reticulum	23.68	14.92
KRH52023	Soybean	cytosol, endoplasmic reticulum	23.68	14.92
KRH50336	Soybean	cytosol	24.18	14.75
KRH67800	Soybean	cytosol	23.43	14.72
KRH70233	Soybean	cytosol	22.67	14.31
KRG96088	Soybean	cytosol	22.92	14.31
KRG91724	Soybean	cytosol	22.42	13.65
KRH08608	Soybean	endoplasmic reticulum	21.66	12.91
VIT_18s0001g10190.t01	Wine grape	cytosol, mitochondrion	2.02	6.4

Protein Annotations

EntrezGene:100814743	MapMan:16.9.4	Gene3D:3.30.70.330	UniProt:A0A0R4J3N9	EMBL:ACUP02004727	EnsemblPlantsGene:GLYMA_07G259500
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KRH51075	ProteinID:KRH51075	ProteinID:KRH51075.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR43955	PANTHER:PTHR43955:SF2	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI00018C7022	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:43507502..43511453

Molecular Weight (calculated)

43909.1 Da

IEP (calculated)

6.627

GRAVY (calculated)

-0.765

Length

397 amino acids

Sequence
(BLAST)

001: MMQAGPGGMA QQANQQYAQQ QQQPYMMMPP QPQPPQMWAT SAQPPSQSVA PPQPTSADEV RTLWIGDLQY WMDENYLYTC LAHTGEVASV KVIRNKQTSQ
101: SEGYGFIEFT SRAGAERVLQ TYNGTIMPNG GQNFRLNWAT LSAGERRHDD SPDHTIFVGD LAADVTDYLL QETFRARYPS IKGAKVVIDR LTGRTKGYGF
201: VRFGDESEQV RAMTEMQGVL CSTRPMRIGP ASNKNPSTQS QPKASYQNPQ GAQNEHDPNN TTIFVGNLDP NVTDDHLRQV FGHYGELVHV KIPAGKRCGF
301: VQFADRSCAE EALRVLNGTL LGGQNVRLSW GRSPSNKQAQ PDANQWNGSG GGYYGYAQGG YENYGYAPAG QDPNMYGSYP GYANYQPPQQ QQQIGYS

Best Arabidopsis Sequence Match ( AT1G11650.2 )
(BLAST)

001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY

Arabidopsis Description

RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.