CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06218	Soybean	nucleus	94.79	96.15
VIT_09s0002g00880.t01	Wine grape	mitochondrion, nucleus	90.52	90.95
AT1G17370.1	Thale cress	mitochondrion, nucleus	82.94	83.53
GSMUA_Achr6P11660_001	Banana	mitochondrion	82.46	82.27
CDY63384	Canola	mitochondrion, nucleus	80.81	81.58
Bra030985.1-P	Field mustard	mitochondrion, nucleus	80.57	81.34
GSMUA_Achr10P...	Banana	mitochondrion	80.81	80.24
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	81.04	78.8
KRH02581	Soybean	mitochondrion	75.59	77.24
KRH19347	Soybean	mitochondrion, nucleus	74.88	77.07
GSMUA_Achr11P...	Banana	nucleus	79.15	75.23
Zm00001d048824_P004	Maize	nucleus	74.88	70.69
Os11t0620100-01	Rice	nucleus	73.46	70.29
Os07t0615400-01	Rice	nucleus	70.85	70.02
Zm00001d026528_P001	Maize	plastid	36.26	69.55
TraesCS4B01G148600.1	Wheat	nucleus	73.22	69.44
EES08860	Sorghum	nucleus	71.8	68.71
TraesCS4D01G150600.2	Wheat	nucleus	72.99	68.6
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	80.57	68.55
KRH52613	Soybean	nucleus	70.38	68.28
KRH61952	Soybean	mitochondrion	68.72	68.24
TraesCS2D01G176700.1	Wheat	nucleus	68.25	67.61
TraesCS4A01G150000.1	Wheat	mitochondrion	71.56	67.41
TraesCS2B01G195400.1	Wheat	nucleus	68.01	66.9
TraesCS2A01G169100.1	Wheat	nucleus	67.77	66.82
HORVU4Hr1G033990.7	Barley	golgi, nucleus	68.72	66.06
CDX81822	Canola	mitochondrion, nucleus	80.33	62.2
HORVU2Hr1G031260.2	Barley	nucleus, plastid	68.48	58.15
Zm00001d026522_P001	Maize	nucleus	33.41	57.79
KRH02082	Soybean	nucleus	27.73	29.1
KRH51075	Soybean	endoplasmic reticulum	27.25	28.97
KRH20867	Soybean	nucleus	27.49	28.36
KRH11417	Soybean	nucleus	27.49	28.22
KRH61258	Soybean	nucleus	26.07	26.89
KRH51956	Soybean	nucleus	25.59	26.28
KRH71168	Soybean	nucleus	26.3	25.75
KRH05723	Soybean	nucleus	25.12	25.67
KRH50251	Soybean	nucleus	25.59	25.06
KRH15315	Soybean	nucleus	25.12	24.94
KRH29709	Soybean	cytosol	22.27	23.44
KRH24702	Soybean	nucleus	22.04	23.19
KRH23136	Soybean	cytosol	22.99	23.15
KRH10201	Soybean	mitochondrion, nucleus, plastid	14.22	20.41
KRH36396	Soybean	endoplasmic reticulum	16.59	19.18
KRH27525	Soybean	nucleus	16.11	18.68
KRH19986	Soybean	cytosol	19.43	16.57
KRH32613	Soybean	cytosol	18.96	16.36
KRH70673	Soybean	nucleus	23.22	15.12
KRH50336	Soybean	cytosol	23.22	15.05
KRH05656	Soybean	endoplasmic reticulum, nucleus	22.51	14.53
KRH15385	Soybean	nucleus	22.27	14.42
KRH67800	Soybean	cytosol	20.85	13.92
KRH61326	Soybean	cytosol, endoplasmic reticulum	20.62	13.81
KRG91724	Soybean	cytosol	21.33	13.8
KRH52023	Soybean	cytosol, endoplasmic reticulum	20.38	13.65
KRG96088	Soybean	cytosol	20.38	13.52
KRH70233	Soybean	cytosol	20.14	13.51
KRH08608	Soybean	endoplasmic reticulum	20.62	13.06

Protein Annotations

EntrezGene:100781227	MapMan:16.9.3	Gene3D:3.30.70.330	UniProt:A0A0R0J569	EMBL:ACUP02004157	ncoils:Coil
EnsemblPlantsGene:GLYMA_07G041500	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	EnsemblPlants:KRH47641	ProteinID:KRH47641	ProteinID:KRH47641.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR44160	PANTHER:PTHR44160:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI00018C7021	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:3469376..3475984

Molecular Weight (calculated)

46024.2 Da

IEP (calculated)

7.866

GRAVY (calculated)

-0.473

Length

422 amino acids

Sequence
(BLAST)

001: MQNHRLKQQQ QQQQQALMQQ ALLQQQSLYH PGLLAPPQIE PYPSGNLPPG FDPSTCRSVY VGNIHTQVTE PLLQEVFSGT GPVEGCKLIR KDKSSYGFIH
101: YFDRRSAALA ILSLNGRHLF GQPIKVNWAY ASGQREDTSG HYNIFVGDLS PEVTDATLFA CFSVYPSCSD ARVMWDQKTG RSRGFGFVSF RNQQDAQSSI
201: NDLTGKWLGS RQIRCNWATK GAGGNEEKQN SDAKSVVELT NGSSEDGKET SNSDAPENNP QYTTVYVGNL APEVTQLDLH RHFHALGAGV MEEVRVQRDK
301: GFGFVRYSTH AEAALAIQMG NAQSLLCGKP IKCSWGSKPT PPGTASNPLP PPAAASLPGL SATDLLAYER QLAISKMGGV HALMHPQGQH HLKQAAAIGA
401: SQAIYDGGFQ NVAAAQQMMY YQ

Best Arabidopsis Sequence Match ( AT1G17370.1 )
(BLAST)

001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ

Arabidopsis Description

UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.